SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36756

Length: 419 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene36756
AAATGCGGGAGTCTGTGATGGAATGACTTACGAGGAAATAAAGAAAAACATGCCTGAAGAATATGAGTATGCGTTGCATGGTGCTCGAAAAGCTGACAAGCTAAGGTACCGTTACCCTCGTGGTGAATCCTACCTTGATGTCATCCAGAGATTAGAACCTGTCATTATTGAGCTGGAACGGCAGCGTGCTCCTGTTGTGGTAATTGCTCATCAGGCTGTTCTACGAGCTTTATATGCATATTTTGCTGATAAACCTTTGAAAGAAGTTCCACACATCGAGGTACCATTGCATACGATAATTGAGATCCAAATGGGTGTGACTGGTGTCCATGAAAAGCTGTATAAGATCATGGATTCATAAGTGTATGCAGGATGATTTATTGTCCTGCAAATACATTGACAGATTGTAATTGAGATTC

Ace file of the UniGene sp_v1.1_unigene36756 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	F2KP; F2KP (FRUCTOSE-2,6-BISPHOSPHATASE); fructose-2,6-bisphosphate 2-phosphatase; K00900 6-phosphofructo-2-kinase [EC:2.7.1.105]; K01103 fructose-2,6-bisphosphatase [EC:3.1.3.46]	-	-	85%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	88%
Blast2go	fructose-6-phosphate 2-kinase fructose- -bisphosphatase	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Fructose-2,6-bisphosphate 2-phosphatase.	EC:3.1.3.46	-	0.0	91%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fructose and mannose metabolism	00051		0.0	91%

Source	ECs	Term	Type	e value	Identity
AutoFact	6-phosphofructo-2-kinase.	EC:2.7.1.105	-	0.0	85%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Fructose and mannose metabolism	00051		0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	fructose metabolic process	GO:0006000	Biological Process	91%
Blast2go	fructose-2,6-bisphosphate 2-phosphatase activity	GO:0004331	Molecular Function	91%
Blast2go	cytosol	GO:0005829	Cellular Component	91%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Fructose-2,6-bisphosphatase	IPR003094	-	0.0	91%
Blast2go	Histidine phosphatase superfamily, clade-1	IPR013078	-	0.0	91%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9HND2

Fln msg: your sequence is shorter than subject: 120 - 498

Fln protein: NAGVCDGMTYEEIKKNMPEEYEYALHGARKADKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVIAHQAVLRALYAYFADKPLKEVPHIEVPLHTIIEIQMGVTGVHEKLYKIMDS*

Protein Length: 121

Fln nts: AAATGCGGGAGTCTGTGATGGAATGACTTACGAGGAAATAAAGAAAAACATGCCTGAAGAATATGAGTATGCGTTGCATGGTGCTCGAAAAGCTGACAAGCTAAGGTACCGTTACCCTCGTGGTGAATCCTACCTTGATGTCATCCAGAGATTAGAACCTGTCATTATTGAGCTGGAACGGCAGCGTGCTCCTGTTGTGGTAATTGCTCATCAGGCTGTTCTACGAGCTTTATATGCATATTTTGCTGATAAACCTTTGAAAGAAGTTCCACACATCGAGGTACCATTGCATACGATAATTGAGATCCAAATGGGTGTGACTGGTGTCCATGAAAAGCTGTATAAGATCATGGATTCATAA___GTGTATGCAGGATGATTTATTGTCCTGCAAATACATTGACAGATTGTAATTGAGATTC

Fln Alignment:

sp_v1.1_unigene36756___NAGVCDGMTYEEIKKNMPEEYEYALHGARKADKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVIAHQAVLRALYAYFADKPLKEVPHIEVPLHTIIEIQMGVTGVHEKLYKIMD
B9HND2_______________NAGVCDGMTYEEIKKNMPEEYE-----ARRKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRALYAYFADRPLKEIPHIEVPLHTIIEIQMGVTGVQEKRYKLMD

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
333		20	80		0.995493
334		20		80	0.995493
337			80	20	0.995493
366	66	33			0.997454
367		33		66	0.997454
368	66	33			0.997458
369	33			66	0.997467
371		66	33		0.997467
373	33			66	0.997464

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain