SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36612

Length: 529 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene36612
GTGGGCTTTTGTTCAATTGCCTTTGGCAGCTGTGAAAGAGGAGATGGTCGCCGTTGAAGATGAATCCTGTTTTGGAAGTGTTCTAGATTTGGATGTACTGGGAATTAGTCTTTCGGATGACACTTTAATACCAGGGGTTTCTATTGCATCTTCAAGAGCTATGGGTTTGGCAGCTTGGACTAATGCATTGGAGATAACTTCAATTGATGTCGATCGACAACGTGCATGCTTGATATTGTCAGCAGGGGTGTCCAAGAGGTGGATATATGCTTTCTATCGGAAAAACAGACAAACAGATCAGGAGGCAGAAGCCTGGGAAGCTGCCAAAAAAGCATGCGGCGGATTGCACTTCTTAGCCATCCAAGGGTCCCTGGATTCAGATTCTTGTGATGGATTTTGGCTTATATTAGACATGCCCAATCCACCTGTATGATATCCAAGGCAAGGAGGCTTTGTAATATATTTAAATGGAATTTTTTTGTGTGAATTTATGTATTCATACATGTATGAATAAGCTGAACCTTCTAAT

Ace file of the UniGene sp_v1.1_unigene36612

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATAB2; ATAB2; RNA binding	-	-	6.0e-38	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	protein	-	-	4.21791e-43	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	4.21791e-43	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	de-etiolation	GO:0009704	Biological Process	4.21791e-43	76%
Blast2go	chloroplast organization	GO:0009658	Biological Process	4.21791e-43	76%
Blast2go	translation	GO:0006412	Biological Process	4.21791e-43	76%
Blast2go	RNA binding	GO:0003723	Molecular Function	4.21791e-43	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF1092	IPR009472	-	4.21791e-43	76%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQI8

Fln msg: your sequence is shorter than subject: 144 - 362

Fln protein: WAFVQLPLAAVKEEMVAVEDESCFGSVLDLDVLGISLSDDTLIPGVSIASSRAMGLAAWTNALEITSIDVDRQRACLILSAGVSKRWIYAFYRKNRQTDQEAEAWEAAKKACGGLHFLAIQGSLDSDSCDGFWLILDMPNPPV*

Protein Length: 145

Fln nts: GTGGGCTTTTGTTCAATTGCCTTTGGCAGCTGTGAAAGAGGAGATGGTCGCCGTTGAAGATGAATCCTGTTTTGGAAGTGTTCTAGATTTGGATGTACTGGGAATTAGTCTTTCGGATGACACTTTAATACCAGGGGTTTCTATTGCATCTTCAAGAGCTATGGGTTTGGCAGCTTGGACTAATGCATTGGAGATAACTTCAATTGATGTCGATCGACAACGTGCATGCTTGATATTGTCAGCAGGGGTGTCCAAGAGGTGGATATATGCTTTCTATCGGAAAAACAGACAAACAGATCAGGAGGCAGAAGCCTGGGAAGCTGCCAAAAAAGCATGCGGCGGATTGCACTTCTTAGCCATCCAAGGGTCCCTGGATTCAGATTCTTGTGATGGATTTTGGCTTATATTAGACATGCCCAATCCACCTGTATGA___TATCCAAGGCAAGGAGGCTTTGTAATATATTTAAATGGAATTTTTTTGTGTGAATTTATGTATTCATACATGTATGAATAAGCTGAACCTTCTAAT

Fln Alignment:

sp_v1.1_unigene36612___WAFVQLPLAAVKEEMVAVEDESCFGSVLDLDVLGISLSDDTLIPGVSIASSRAMGLA
A9NQI8_______________WAFVQLPLAVVQEELAIVQEESSFGSVLDLDTLGISLSDDALIPGVAIASSRAIGLA

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
146			25	75	0.996473
220		85	14		0.993533
221	71		28		1.0
345			85	14	0.993533
346	85	14			0.993533
347			14	85	0.993533
350	14	85			0.993533
351	85	14			0.993533
355		85	14		0.993533
356			14	85	0.993533
357		14		85	0.993533
358	85			14	0.993533
360		83		16	0.994512
363		16		83	0.994512
364		83		16	0.994512
370	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain