SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36567

Length: 368 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene36567
GTCAACAGACCCAAAGCCTCGATTGAGGTGGACTGCAGAGCTTCATGAGAGATTCGTAGACGCTGTGACTAAGCTTGGAGGTCCAGATAAGGCGACGCCCAAGGCTGTGAGGACCCGCATGGGGGTCGAAGGCCTTACTCTTTATCACCTAAAGAGCCATCTTCAGAAATACAGGCTTGGCAAGCAGCCTCACGAGGAAGTTAATGTGGACACTAGTCGGGATGGATATGGGTCAACAGCTTGCAGGGTTCCTGAGGTTCAAGTTGCATGCAATTCTGTTCCTAGCATCATCCCAGCAAATATGACAGACACCTTACAAATCACAGAAGCTCTGAGGATGCAAATGGAGGTACAGAGAAGATTGCACG

Ace file of the UniGene sp_v1.1_unigene36567

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription factor, putative	-	-	9.0e-34	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	protein	-	-	4.58904e-35	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	double fertilization forming a zygote and endosperm	GO:0009567	Biological Process	4.58904e-35	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Myb DNA-binding domain, plants	IPR006447	-	4.58904e-35	73%
Blast2go	Homeodomain-like	IPR009057	-	4.58904e-35	73%
Blast2go	Homeodomain-related	IPR012287	-	4.58904e-35	73%
Blast2go	Myb, DNA-binding	IPR014778	-	4.58904e-35	73%
Blast2go	Myb domain, DNA-binding	IPR017930	-	4.58904e-35	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPV3

Fln msg: Distance to subject end: 235 aas, your sequence is shorter than subject: 122 - 392

Fln protein: STDPKPRLRWTAELHERFVDAVTKLGGPDKATPKAVRTRMGVEGLTLYHLKSHLQKYRLGKQPHEEVNVDTSRDGYGSTACRVPEVQVACNSVPSIIPANMTDTLQITEALRMQMEVQRRLH

Protein Length: 123

Fln nts: GTCAACAGACCCAAAGCCTCGATTGAGGTGGACTGCAGAGCTTCATGAGAGATTCGTAGACGCTGTGACTAAGCTTGGAGGTCCAGATAAGGCGACGCCCAAGGCTGTGAGGACCCGCATGGGGGTCGAAGGCCTTACTCTTTATCACCTAAAGAGCCATCTTCAGAAATACAGGCTTGGCAAGCAGCCTCACGAGGAAGTTAATGTGGACACTAGTCGGGATGGATATGGGTCAACAGCTTGCAGGGTTCCTGAGGTTCAAGTTGCATGCAATTCTGTTCCTAGCATCATCCCAGCAAATATGACAGACACCTTACAAATCACAGAAGCTCTGAGGATGCAAATGGAGGTACAGAGAAGATTGCACG

Fln Alignment:

sp_v1.1_unigene36567___STDPKPRLRWTAELHERFVDAVTKLGGPDKATPKAVRTRMGVEGLTLYHLKSHLQKYRLGKQPHEEVNVDTSRD------GYGSTACRVPEVQVACNSVPSIIPANMTDTLQITEALRMQMEVQRRLH
C0PPV3_______________TTDPKPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRAMGVKGLTLYHLKSHLQKYRLGKQPFKEFSDQSNKDASCLTEGQGASTC----------SSSKMINQDVNESFQITEALRVQMEVQRRLH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain