SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36530

Length: 289 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene36530
CGTCGTGACCTTGGCTGTCACTCAGATTTTGGGGACTTTCCAAATGACCTGAATTTTTGCTTAGATGGTCTAACATGGCCAGATCGAACTCCTCATCCAGGACTCAATGAGATCAAATATGTTTACCAACCAATAAGGATTTCGAAGAGGGAAGACACCATTGAGATATATAACAAGAATTTCTTTGATACAACAGAAAATCTGGAGATTGGTTGGTCTCTGAGTGGGGATGGTAAAGTTTTGGGAACTGGATTAATGGATTTACCTCCACTGGAACCTCAAAATAAAC

Ace file of the UniGene sp_v1.1_unigene36530

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	beta-galactosidase, putative (EC:3.2.1.23)	-	-	7.0e-28	59%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	62%
Blast2go	glycoside hydrolase family 2 tim barrel	-	-	5.05324e-29	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	5.05324e-29	74%
Blast2go	chloroplast	GO:0009507	Cellular Component	5.05324e-29	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich	IPR006102	-	5.05324e-29	74%
Blast2go	Glycoside hydrolase, family 2, TIM barrel	IPR006103	-	5.05324e-29	74%
Blast2go	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	5.05324e-29	74%
Blast2go	Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain	IPR013812	-	5.05324e-29	74%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	5.05324e-29	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9GM04

Fln msg: Distance to subject end: 383 aas, your sequence is shorter than subject: 96 - 1110

Fln protein: RRDLGCHSDFGDFPNDLNFCLDGLTWPDRTPHPGLNEIKYVYQPIRISKREDTIEIYNKNFFDTTENLEIGWSLSGDGKVLGTGLMDLPPLEPQNK

Protein Length: 97

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATTTTGGGGACTTTCCAAATGACCTGAATTTTTGCTTAGATGGTCTAACATGGCCAGATCGAACTCCTCATCCAGGACTCAATGAGATCAAATATGTTTACCAACCAATAAGGATTTCGAAGAGGGAAGACACCATTGAGATATATAACAAGAATTTCTTTGATACAACAGAAAATCTGGAGATTGGTTGGTCTCTGAGTGGGGATGGTAAAGTTTTGGGAACTGGATTAATGGATTTACCTCCACTGGAACCTCAAAATAAAC

Fln Alignment:

sp_v1.1_unigene36530___DFGDFPNDLNFCLDGLTWPDRTPHPGLNEIKYVYQPIRISKREDTIEIYNKNFFDTTENLEIGWSLSGDGKVLGTGLMDLPPLEPQN
B9GM04_______________DFGDTPNDLNFCLNGLTWPDRTPHPALHEVKYVYQPIKVSLEESRIKITSTHFFQTTQGLEFSWATQGDGYEIGSGILSLPPIEPQS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain