SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36510

Length: 345 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene36510
CGTCGTGACCTTGGCTGTCACTCAATTCAGGACGATATAGGTTGGGGCCTAGGATTTGGCATTCCTGCTGTGACTATGGCAATAGCACTGCTTATCTTCTTGTGTGGGACAAAATTTTACCGGCATAAACTGCCTGGTGGTAGTCCTCTTACTCGAATTGTCCATGTCTTTGTTGCAACATTTTATAAATGGAACGTTTCCACTTCTTATCAGGAAGAAAATAACGTAGCTCGCATTGAAGAAAAAGAAGCTTCGATTTTTGGACCAAGAAGACAGCAATTGCGTACTGATCAGTTTAGGTTTCTTGACAAAGCTACAGTTGAAGATGAGTTGGACCATGAGTGT

Ace file of the UniGene sp_v1.1_unigene36510

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptide transporter n=1 Tax=Hakea actites RepID=A6YJX4_9MAGN	-	-	6.0e-19	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	protein	-	-	4.72238e-43	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Oligopeptide transporter	IPR000109	-	4.72238e-43	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ03

Fln msg: Distance to subject end: 272 aas, your sequence is shorter than subject: 115 - 573

Fln protein: RRDLGCHSIQDDIGWGLGFGIPAVTMAIALLIFLCGTKFYRHKLPGGSPLTRIVHVFVATFYKWNVSTSYQEENNVARIEEKEASIFGPRRQQLRTDQFRFLDKATVEDELDHEC

Protein Length: 116

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCAGGACGATATAGGTTGGGGCCTAGGATTTGGCATTCCTGCTGTGACTATGGCAATAGCACTGCTTATCTTCTTGTGTGGGACAAAATTTTACCGGCATAAACTGCCTGGTGGTAGTCCTCTTACTCGAATTGTCCATGTCTTTGTTGCAACATTTTATAAATGGAACGTTTCCACTTCTTATCAGGAAGAAAATAACGTAGCTCGCATTGAAGAAAAAGAAGCTTCGATTTTTGGACCAAGAAGACAGCAATTGCGTACTGATCAGTTTAGGTTTCTTGACAAAGCTACAGTTGAAGATGAGTTGGACCATGAGTGT

Fln Alignment:

sp_v1.1_unigene36510___IQDDIGWGLGFGIPAVTMAIALLIFLCGTKFYRHKLPGGSPLTRIVHVFVATFYKWNVSTSYQEENNVARIEEKEASIFGPRRQQLRTDQFRFLDKATVEDELDHEC
B8LQ03_______________IQDNVGWGLGFGIPAVTMAVALFIFLCGTRFYRHKLPGGSPLTRIIHVFVATFHKWNVSTSHQEKKKVAASAETGVLKFGSRRQYLPTDQFRFLDKATVEDELDYDC

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
42	33			66	0.997476
117			33	66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain