SustainPineDB

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Assembly info
Unigenes
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GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36481

Length: 327 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene36481
CGTCGTGACCTTGGCTGTCACTCATCAGAGTCTCACATGCTGCAACCGAGAAGGCGGTTCGAATACTGTGGTCGCTTTGCAAGTTCTCTCCGACTCCTCACCTTCTTCGTGACCTTGGCTGTCGGTCCGTGTATAAATTGTGCATGCTTCTGCCGCTTGAATGCACACCAAAGACGAAGCACAAGGCAAAGGAAATTCTCAGAGAGCACGATAAGTATTGGAGGAACTCTGTTTGCGTTCCATCCCATCTGTTCACAGTCTATGGAGAACAATGAGCAATATTGTGTACAATGTATTATTAACTCTAGTATTGGCAGTTAATCTGAA

Ace file of the UniGene sp_v1.1_unigene36481

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ubiquitin-protein ligase, putative	-	-	4.0e-15	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	protein	-	-	2.3991e-23	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	2.3991e-23	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	2.3991e-23	69%
Blast2go	protein autoubiquitination	GO:0051865	Biological Process	2.3991e-23	69%
Blast2go	response to chitin	GO:0010200	Biological Process	2.3991e-23	69%
Blast2go	respiratory burst involved in defense response	GO:0002679	Biological Process	2.3991e-23	69%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	2.3991e-23	69%
Blast2go	cytosol	GO:0005829	Cellular Component	2.3991e-23	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXN2

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 91 - 417

Fln protein: S*PWLSLIRVSHAATEKAVRILWSLCKFSPTPHLLRDLGCRSVYKLCMLLPLECTPKTKHKAKEILREHDKYWRNSVCVPSHLFTVYGEQ*

Protein Length: 92

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCAGAGTCTCACATGCTGCAACCGAGAAGGCGGTTCGAATACTGTGGTCGCTTTGCAAGTTCTCTCCGACTCCTCACCTTCTTCGTGACCTTGGCTGTCGGTCCGTGTATAAATTGTGCATGCTTCTGCCGCTTGAATGCACACCAAAGACGAAGCACAAGGCAAAGGAAATTCTCAGAGAGCACGATAAGTATTGGAGGAACTCTGTTTGCGTTCCATCCCATCTGTTCACAGTCTATGGAGAACAATGA___GCAATATTGTGTACAATGTATTATTAACTCTAGTATTGGCAGTTAATCTGAA

Fln Alignment:

sp_v1.1_unigene36481___LIRVSHAATEKAVRILWSLCKFSPTPHLLRDL-GCRSVYKLCMLLPLECTPKTKHKAKEILREHDKYWRNSVCVPSHLFTVYGE
A9NXN2_______________IFRVSQVATEKAIRILWSLCKFSPTPRLLNEMVQIGAVYKLCVLLQLECTSKTKQKAREMLRAHGKYWTISPCVPSYSLGIYGQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain