SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36400

Length: 1480 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene36400

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Root_cap domain containing protein	-	-	1.0e-25	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Blast2go	structural constituent of cell	-	-	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Root cap	IPR009646	-	0.0	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAU8

Fln msg:

Fln protein: MEMAKGVGLLVVVLALFVQCNARDPYATPSPPGPSVQAPPPPFRVAGLTRPAEQEKCYQKSRCQGVTLQCPKECPERNPADQTAKGCFVDCGPKCEATCRTRKPNCEGVGALCYDPRFVGGDGVMFYFHGKSNRDFSLVSDDKLQINAHFIGRRPEGRTRDYTWVQSLGIMFGTHTFTVGANKVAEWDDNVDQFFFTFNKQAFTLPRGHRTVWNSPENELTVERTGESNSINVEIPNLMQLAISVVPITEEDNRVHKYGIPSDDCFAHLAIEFKYLRLSPAVEGVLGQTYRPDFKSPVKVGVPMPIMGGEDKYGTSSLLSADCKLCSFKLGTTSPRFESLLVDSTMGLDCTNKFGNGHGIVCRR*

Protein Length: 366

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATGCAGAGCTTCGCCTCCTAAGTTGCCTCTTTTGAAGCTCGGGCATTCTGATAGTTTGTGTTCAATAATTGTCTGTGAAT_-_ATGGAGATGGCAAAGGGAGTCGGGCTCCTTGTGGTGGTTCTTGCATTGTTTGTTCAGTGCAATGCCAGGGATCCCTATGCTACTCCAAGTCCCCCGGGTCCGTCAGTACAGGCCCCTCCACCACCGTTTAGAGTGGCCGGGCTGACCAGACCCGCAGAACAAGAGAAGTGTTACCAAAAGTCCAGATGCCAAGGGGTAACTCTTCAATGCCCTAAGGAGTGTCCCGAACGAAATCCCGCAGATCAGACCGCGAAGGGGTGCTTCGTCGATTGCGGTCCCAAGTGTGAAGCAACCTGCAGAACCCGAAAACCTAACTGTGAAGGGGTTGGAGCTCTGTGCTACGATCCCCGCTTCGTTGGAGGAGATGGAGTGATGTTCTACTTCCATGGAAAGAGTAACCGCGATTTCAGCCTGGTGTCAGATGATAAATTGCAAATAAATGCTCATTTTATTGGCCGAAGGCCTGAAGGGAGAACTAGGGATTACACCTGGGTTCAATCCCTGGGAATCATGTTCGGCACTCATACTTTCACAGTCGGTGCTAACAAAGTGGCCGAATGGGACGACAATGTCGATCAATTCTTCTTCACCTTCAACAAGCAAGCCTTCACCCTCCCACGAGGACATCGCACTGTCTGGAACTCGCCAGAGAATGAACTCACAGTGGAACGGACCGGTGAATCCAACAGCATTAATGTTGAAATACCCAATCTGATGCAGTTGGCTATCAGCGTGGTGCCCATTACTGAGGAGGATAACCGTGTTCATAAATACGGAATACCGTCGGACGATTGCTTTGCTCATCTGGCAATAGAGTTCAAGTACTTGCGTCTCTCTCCGGCCGTAGAGGGCGTTCTCGGGCAAACTTATAGGCCAGATTTTAAGAGTCCTGTCAAGGTTGGTGTTCCGATGCCTATCATGGGAGGTGAAGACAAGTACGGGACCTCGTCTCTTCTTTCCGCAGACTGCAAGTTATGCAGCTTCAAGCTGGGAACCACTTCTCCCCGCTTTGAAAGCTTGCTTGTCGATTCTACTATGGGGCTTGACTGTACCAACAAGTTCGGAAACGGCCATGGTATTGTATGTCGCAGATAA___ATAAAGGGAGGAGATAGGAAAAAAATGTGTGATCCTCGTAAGGCTAGGGATGCAGTAGTTAGATGCGCCGAATAAGAGTCGTCTGCTTGTTTTCAGATTTTATACGCATTTGTGTGTTGTACGTCTATcTATACTGTATTTGGTTTATTTCCGCTATTAGCGACTATAAGGATATGATTTCTCTTCATGTCAATTTGTTCATTAAAAGATATCTTTACGTACGTAGTATATTACTTTGTTTATTTCCGTAATTAGGAGAATTTGATTGTCCTTTATGTTC

Fln Alignment:

sp_v1.1_unigene36400___SRCQGVTLQCPKECPERNPADQTAKGCFVDCGPKCEATCRTRKPNCEGVGALCYDPRFVGGDGVMFYFHGKSNRDFSLVSDDKLQINAHFIGRRPEGRTRDYTWVQSLGIMFGTHTFTVGANKVAEWDDNVDQFFFTFNKQAFTLPRGHRTVWNSPENELTVERTGESNSINVEIPNLMQLAISVVPITEEDNRVHKYGIPSDDCFAHLAIEFKYLRLSPAVEGVLGQTYRPDFKSPVKVGVPMPIMGGEDKYGTSSLLSADCKLCSFKLGTTSPRFESLLVDSTMGLD----------CTNKFGNGHGIVCRR
D5AAU8_______________SHCTG-TIKCPESCPE--------------CHLSCKFCGMAHCPKCDRVGSVCQDPRFIGGDGQMFYFHGYKDSDFCLVTDKGLHINAHFIGKRTANRTRDFTWVQALGILFDTHKFYVGSKRVGKWHSSVDQFVLYFDGYSISLPPGEGSKWVSPNRELSIVRVENANYLNVEITGLLNSSIGIVPVTKEDSRVHKYEITDADCFAHLELNFDFFKLTDSVSGVLGQSYAPSFVNPVKKGVPMPLMGGEKNFMASSIFTPDCEAVQFK-----AMHHSSIVGSGLGRNPHRLGMPSAVCSSNGSEGSGFVCKR

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
170	11	88			0.991528
175		22	77		0.999999
457		85	14		0.993533
463		14		85	0.993533
467	14		85		0.993533
666	14		85		0.993533
668	85			14	0.993533
672	14		85		0.993533
675	14		85		0.993533
679	85			14	0.993533
680			14	85	0.993533
683		85	14		0.993533
684	14		85		0.993533
686		14		85	0.993533
691		14		85	0.993533
694		14		85	0.993533
697		14		85	0.993533
725	12	75			0.975346
726	12	87			0.992554
742		81	18		0.999994
887			87	12	0.999964
888	87	12			0.999964
890	81	6	12		0.999943
909			87	12	0.999964
967	68		25		1.0
988			9	90	0.999872
990	90	9			0.999872
991			9	90	0.999872
992	90			9	0.999872
994	9		90		0.999872
999	90		9		0.999872
1001	90	9			0.999872
1003			9	90	0.999872
1005		9		90	0.999872
1007	90			9	0.999872
1008		9	90		0.999872
1112		13		86	0.999973
1247	11		88		0.991528
1346	83	16			0.994512
1347	50			50	1.0
1348	40	40		20	1.0
1349		16		83	0.994512
1350	83		16		0.994512
1351		16		83	0.994512
1353		83	16		0.994512
1356	20			80	0.995493
1357	80		20		0.995493
1360	20			80	0.995493
1361		20		80	0.995493
1362	20		80		0.995493
1364			20	80	0.995493
1365		20		80	0.995493
1366		20		80	0.995493
1388	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain