SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36355

Length: 240 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene36355
CGTCGTGACCTTGGCTGTCACTCAAGGCATGGAGGTTTTAGAGGAGCTGGAAATGGTGTTCGTGCCCTTGGCTGTCACTGGGGACGGGAAGATATCTGCTTCGGAGCTGGGCGCAGTTATCAATTCTCTTTTCAAGTATGCGTCGAGCGAAGAAGAGTTGGATCTGATAATGAAAGAAATTGACTCAGACGGCGATGGGCTTATCGATCTCCAGGAATTCATCCATTTCAATACAAAGGG

Ace file of the UniGene sp_v1.1_unigene36355

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calcium-binding pollen allergen n=1 Tax=Arachis hypogaea RepID=Q45W79_ARAHY	-	-	2.0e-09	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%

Source	InterPros	Term	Type	Identity
Blast2go	Calcium-binding EF-hand	IPR002048	-	-
Blast2go	EF-hand-like domain	IPR011992	-	-
Blast2go	EF-Hand 1, calcium-binding site	IPR018247	-	-
Blast2go	EF-hand	IPR018248	-	-
Blast2go	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NP03

Fln msg: Distance to subject end: 25 aas, your sequence is shorter than subject: 79 - 140

Fln protein: VVTLAVTQGMEVLEELEMVFVPLAVTGDGKISASELGAVINSLFKYASSEEELDLIMKEIDSDGDGLIDLQEFIHFNTK

Protein Length: 80

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGCATGGAGGTTTTAGAGGAGCTGGAAATGGTGTTCGTGCCCTTGGCTGTCACTGGGGACGGGAAGATATCTGCTTCGGAGCTGGGCGCAGTTATCAATTCTCTTTTCAAGTATGCGTCGAGCGAAGAAGAGTTGGATCTGATAATGAAAGAAATTGACTCAGACGGCGATGGGCTTATCGATCTCCAGGAATTCATCCATTTCAATACAAAGGG

Fln Alignment:

sp_v1.1_unigene36355___GDGKISASELGAVINSLFKYASSEEELDLIMKEIDSDGDGLIDLQEFIHFNTK
A9NP03_______________GDGKISSSELGDILRSM-GCRVGPRELGLMMKEADADGDGFISLEEFIDLNTK

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
116		66		33	0.997464
117	66	33			0.997464
120			33	66	0.997464
122		33		66	0.997461
124	66			33	0.997464
133	33			66	0.997476
134		33		66	0.997476

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain