SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36239

Length: 781 nt

Origin of reads: Biogeco_1

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene36239

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	metal abc transporter, putative (EC:3.6.3.30)	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	abc transporter-like protein	-	-	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ABC transporter-like	IPR003439	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEF2

Fln msg: Overlapping hits, possible frame ERROR between 149 and 149, and overlapping frame ERROR between 466 and 451, STOP codon was not found. Distance to subject end: 4 aas, W2: There is no M at the beginning,

Fln protein: WLSGTSNSSSAYHGQRLRLLSSKRGSGVWVSAEYSCLQVQGVSYRAPGxxHNLLNQVTFSLPEKSLGLVYGRSGSGKTTLLQVLGGLAKPTEGSIYIQKIGLDGEPNQSRETLLATKVGIVFQFPERFFLADTVLEELTFGWPRQLEDxxxxxxxxMRLESAIRAVGLSGISLDLNPRSLSDGFKRRLALAVQLVRMPDILLLDEPLAGLDWKARTDVVKLLENLKKERMLIVVSHDLKEISPLVDKAWRMDMGGFLIEE

Protein Length: 261

Fln nts: T_-_ATGGCTATCAGGCACAAGCAACAGTAGTTCTGCTTACCATGGCCAGCGGTTAAGGCTTCTGTCCTCAAAGCGAGGAAGTGGCGTTTGGGTTTCGGCAGAATACAGTTGTCTTCAGGTACAAGGTGTAAGCTATCGTGCACCTGGCxxxxxxCATAATCTTTTAAATCAAGTTACTTTTTCTCTTCCAGAAAAAAGCTTAGGATTGGTCTATGGACGCAGTGGTAGTGGGAAGACAACTTTGTTGCAGGTTCTTGGTGGCTTAGCAAAGCCAACAGAGGGATCAATCTATATTCAAAAGATTGGTCTAGATGGAGAACCAAATCAATCACGAGAAACATTATTGGCTACAAAGGTTGGGATTGTATTCCAATTTCCAGAGAGGTTCTTTTTGGCTGATACTGTGTTGGAGGAGCTCACTTTTGGATGGCCAAGGCAATTGGAAGACCAxxxxxxxxxxxxxxxxxxxxxAATGAGGCTTGAGTCAGCTATTCGAGCTGTTGGACTGAGTGGGATCTCCTTAGATCTTAATCCACGCTCTTTAAGTGACGGTTTCAAGCGTCGTCTTGCACTGGCAGTTCAGCTTGTACGCATGCCAGACATCTTGTTGTTAGATGAGCCTCTTGCAGGTCTTGACTGGAAAGCTCGGACAGATGTGGTAAAGTTACTGGAGAATCTGAAGAAAGAAAGAATGTTGATTGTCGTCAGCCATGATTTGAAAGAAATTTCTCCACTGGTGGATAAAGCTTGGAGAATGGATATGGGTGGGTTTTTAATAGAAGAAC

Fln Alignment:

sp_v1.1_unigene36239___GVWVSAEYSCLQVQGVSYRAPGTQHNLLNQVTFSLPEKSLGLVYGRSGSGKTTLLQVLGGLAKPTEGSIYIQKIGLDGEPNQSRETLLATKVGIVFQFPERFFLADTVLEELTFGWPRQLEDQLxxxxxAMRLESAIRAVGLSGISLDLNPRSLSDGFKRRLALAVQLVRMPDILLLDEPLAGLDWKARTDVVKLLENLKKERMLIVVSHDLKEISPLVDKAWRMDMGGFLIEE
D5AEF2_______________GIWVSAEYSCLQVQGVSYRAPGTQQNLLNQVTFSLPEKSLGLVYGRSGSGKTTLLQVLGGLAKPTEGSIYIQKTGLDGQLNQSPETLSASKVGIVFQFPERFFLADTVLEELTFGWPRQLEDQLxxxxxVMRLESAIRAVGLSGISLDLNPRSLSDGFKRRLALAVQLVRMPDILLLDEPLAGLDWKARTDVVKLLETLKKERMLIVVSHDLKEISPLVDKAWRMDMGGFLIEE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
626		33	66		0.997457
630			33	66	0.997457

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain