SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36219

Length: 508 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene36219
TTTAGCTTGTCTAGGTTGACAATTGCTGCTAACTCCAATGTGATTGCATTGAATGCCAAGATTGCAGATTTTGGCTTGTCTAGGTTGATGACAATTGCTTCCAATTCCAATGTGATAGCCACAGCAGATGGTTGTCTGGTATTCACAGCAGATGACCTACTTTGTGCAACTGCAGAATTAATGGGCAAGAGCACTTATGGAACTGTGTATAAGGCTACTTTGGAGGACGGGAAATCAAGTTGCAGTGAAGAAGCCGAGGGAGCGAATAACAAAGAGTCAGAGAATTTGAGACAGAAGCTAATGATCGGGGGAAGATCAGGCATCTTAATTAGCTTGCTTCTGAGAGCTTATTACTGGGGACCTAAAGATGAAAAACTCTTGGTCTTTGACTTCATGTCTGGTGAAAATCTTGCAGCATTCCTTCATGCAAGAGGCTCACAGACAAGACACCTTTGAATTGGCACACCAGGATGGAAATTGCAATTGGTGCATGGCAAGGACTTGCTTA

Ace file of the UniGene sp_v1.1_unigene36219 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nodulation receptor kinase precursor, putative (EC:2.7.11.22)	-	-	4.0e-22	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Blast2go	protein	-	-	1.72525e-24	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	1.72525e-24	65%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	1.72525e-24	65%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.72525e-24	65%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LN40

Fln msg: Overlapping hits, possible frame ERROR between 438 and 432, Distance to subject end: 198 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 140 - 340

Fln protein: MTIASNSNVIATADGCLVFTADDLLCATAELMGKSTYGTVYKATLEDGKSSCSEEAEGANNKESENLRQKLMIGGRSGILISLLLRAYYWGPKDEKLLVFDFMSGENLAAFLHAxxxxDKTPLNWHTRMEIAIGAWQGLA

Protein Length: 141

Fln nts: TTTAGCTTGTCTAGGTTGACAATTGCTGCTAACTCCAATGTGATTGCATTGAATGCCAAGATTGCAGATTTTGGCTTGTCTAGGTTG_-_ATGACAATTGCTTCCAATTCCAATGTGATAGCCACAGCAGATGGTTGTCTGGTATTCACAGCAGATGACCTACTTTGTGCAACTGCAGAATTAATGGGCAAGAGCACTTATGGAACTGTGTATAAGGCTACTTTGGAGGACGGGAAATCAAGTTGCAGTGAAGAAGCCGAGGGAGCGAATAACAAAGAGTCAGAGAATTTGAGACAGAAGCTAATGATCGGGGGAAGATCAGGCATCTTAATTAGCTTGCTTCTGAGAGCTTATTACTGGGGACCTAAAGATGAAAAACTCTTGGTCTTTGACTTCATGTCTGGTGAAAATCTTGCAGCATTCCTTCATGCAxxxxxxxxxxxxGACAAGACACCTTTGAATTGGCACACCAGGATGGAAATTGCAATTGGTGCATGGCAAGGACTTGCTTA

Fln Alignment:

sp_v1.1_unigene36219___FTADDLLCATAELMGKSTYGTVYKATLEDGKSSCSEEAE--GANNKESENLRQKLMXXXXXXXXXXXXXRAYYWGPKDEKLLVFDFMSGENLAAFLH-AxxxDKTPLNWHTRMEIAIGAWQGLA
B8LN40_______________FDLEDLLRASAEVLGKGSVGTAYKAVLEDGTTVVVKRLKDVAANRKDFE---QQMELVGRIRHRNLVPLRAFYYS-KDEKLLVYDYMPTGSLSALLHGSxxxGRTPLDWDTRMRIALGAARGIS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain