SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36178

Length: 741 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene36178 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mini zinc finger 1 n=1 Tax=Welwitschia mirabilis RepID=B0LK08_WELMI	-	-	1.0e-23	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	zinc finger homeodomain protein 1	-	-	1.61781e-29	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to gibberellin stimulus	GO:0009739	Biological Process	1.61781e-29	80%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	1.61781e-29	80%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	1.61781e-29	80%
Blast2go	response to cytokinin stimulus	GO:0009735	Biological Process	1.61781e-29	80%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	1.61781e-29	80%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	1.61781e-29	80%
Blast2go	response to brassinosteroid stimulus	GO:0009741	Biological Process	1.61781e-29	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ZF-HD homeobox protein, Cys/His-rich dimerisation domain	IPR006456	-	1.61781e-29	80%

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
194		20		60	0.99255
291		25		75	0.99649
295		33		66	0.997452
368		14	85		0.993533
370		14		85	0.993533
371	14		85		0.993536
372			85	14	0.993536
529	87	12			0.992554
532			87	12	0.992556
567		14	85		0.993535
568		14	85		0.993535
614	20	80			0.995497
620	25	75			0.996475
621		75		25	0.996476
623		75		25	0.99649
624	75			25	0.996483

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain