SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36139

Length: 577 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene36139
ATTGTGATTATACTCGATGATAACTTCGCCACAATCGTCACAGTTGCCAAGTGGGGCCGTTCTGTGTTTATAAACATTCAAAAATTTGTGCAATTTCAACTGACAGTTAATGTGGTTGCGCTAATTGTGAATTTTTCCTCGGCATGTGTCACCGGTAGCTCTCCCCTCACAGCAGTACAGCTGTTATGGGTGAATGTGATCATGGATACTCTTGGAGCCTTGGCATTGGCAACAGAGCCTCCAAATGATGAATTGATGAAAAGAAAGCCTGTTGGAAGAGGCGGAAGCATCATCAGCAATGTTATGTGGAGGAATATTTTTGGCCAAGCTCTGTACCAGCTCATTGTAATATGGACGCTGCAAGCCAAAGGAAAAACGCTATTAGAACTGGATGGACGGGATGCGGATTTGGTGCTAAACACACTGATCTTCAACTCATTTGTCTTCTGCCAGGTACCCTTTCCCTGACACACGGTCACACTTATGTGCACACATTTTTCATACTTGAAGGAAAGGCATGAGTAGGATTCTTGAGTCTTGGCCTGAGATATAATGCGTTTAGAAATTGGAGCCTAAG

Ace file of the UniGene sp_v1.1_unigene36139

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cation-transporting atpase plant, putative (EC:3.6.3.8)	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	62%
Blast2go	plasma membrane-type calcium atpase	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Calcium-transporting ATPase.	EC:3.6.3.8	-	0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	91%
Blast2go	cellular metabolic process	GO:0044237	Biological Process	91%
Blast2go	calcium-transporting ATPase activity	GO:0005388	Molecular Function	91%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	91%
Blast2go	endoplasmic reticulum membrane	GO:0005789	Cellular Component	91%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	91%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	91%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ATPase, P-type cation-transporter, C-terminal	IPR006068	-	0.0	91%
Blast2go	ATPase, P-type, transmembrane domain	IPR023298	-	0.0	91%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AEG4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 81 aas, your sequence is shorter than subject: 156 - 387

Fln protein: IVIILDDNFATIVTVAKWGRSVFINIQKFVQFQLTVNVVALIVNFSSACVTGSSPLTAVQLLWVNVIMDTLGALALATEPPNDELMKRKPVGRGGSIISNVMWRNIFGQALYQLIVIWTLQAKGKTLLELDGRDADLVLNTLIFNSFVFCQVPFP*

Protein Length: 157

Fln nts: ATTGTGATTATACTCGATGATAACTTCGCCACAATCGTCACAGTTGCCAAGTGGGGCCGTTCTGTGTTTATAAACATTCAAAAATTTGTGCAATTTCAACTGACAGTTAATGTGGTTGCGCTAATTGTGAATTTTTCCTCGGCATGTGTCACCGGTAGCTCTCCCCTCACAGCAGTACAGCTGTTATGGGTGAATGTGATCATGGATACTCTTGGAGCCTTGGCATTGGCAACAGAGCCTCCAAATGATGAATTGATGAAAAGAAAGCCTGTTGGAAGAGGCGGAAGCATCATCAGCAATGTTATGTGGAGGAATATTTTTGGCCAAGCTCTGTACCAGCTCATTGTAATATGGACGCTGCAAGCCAAAGGAAAAACGCTATTAGAACTGGATGGACGGGATGCGGATTTGGTGCTAAACACACTGATCTTCAACTCATTTGTCTTCTGCCAGGTACCCTTTCCCTGACACACGGTCACACTTATGTGCACACATTTTTCATACTTGAAGGAAAGGCATGAGTAGGATTCTTGAGTCTTGGCCTGAGATATAATGCGTTTAGAAATTGGAGCCTAAG

Fln Alignment:

sp_v1.1_unigene36139___VIILDDNFATIVTVAKWGRSVFINIQKFVQFQLTVNVVALIVNFSSACVTGSSPLTAVQLLWVNVIMDTLGALALATEPPNDELMKRKPVGRGGSIISNVMWRNIFGQALYQLIVIWTLQAKGKTLLELDGRD---ADLVLNTLIFNSFVFCQV
D5AEG4_______________IIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALSINFVAAVSSGDVPLTAVQLLWVNLIMDTLGALALATEAPTDHLMNRPPVGRREPLITNIMWRNLIVQAFYQVIVLLVLTFKGNDILNLKDDSTARANKVRNTVIFNAFVFCQI

SNPs (tot: 3)

Position	A %	G %	T %	Probability
302	33	66		0.997467
305	66	33		0.997459
306		33	66	0.997455

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain