SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36107

Length: 1119 nt

Origin of reads: Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene36107 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Subtilisin-like serine protease n=1 Tax=Carica papaya RepID=C3VDI0_CARPA	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	subtilisin-like protease	-	-	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	0.0	64%
Blast2go	lateral root morphogenesis	GO:0010102	Biological Process	0.0	64%

Source	InterPros	Term	Type	Identity
Blast2go	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	64%
Blast2go	Peptidase S8, subtilisin-related	IPR015500	-	64%
Blast2go	Peptidase S8, subtilisin, Ser-active site	IPR023828	-	64%

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
45	33		66		0.997452
184			25	75	0.996473
185	75			25	0.996473
872			50	50	1.0
876		50		50	1.0
878		50	50		1.0
892	50		50		1.0
894	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain