SustainPineDB

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Assembly info
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36084

Length: 452 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene36084
ATTCATAGGAGTCTCATTACTTGCAAATACGATAGGGATCCTAAGATTGGCTGTTGGCCCATAGAGGTACTCAGAAATTGAAAATCTGGTCATTTGTCTTTTTGGGGTACTAGAGGTTAACATGGCTTTGTTTTCCTCTCTTGCCATCCTTTTGCCTGCACATGTAGTTTTGAATGTAAAATAATGATTTGAATTGCAGAGTATGATGAAGTTTTTGACAGAGTTTGAAGCCAAATTGGGTATCCGAATCCAATGTTCACGCGAAATTGAGCCTTTGGGCACTGCTGGTCCTCTGGCTTTAGCCAAGGATAAGCTTATTGATGGTTCGGGACAGCCAATTTTTGTATTGAACAGTGATGTAATCTGTGAGTTTCCATTGAAGGAGATGCTAGAGTTCCACAAATCATGTGGTGCAGAAGCCTCTGTAATGGTCACAAGGGTGGATGAGCCAT

Ace file of the UniGene sp_v1.1_unigene36084

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CYT1; CYT1 (CYTOKINESIS DEFECTIVE 1); mannose-1-phosphate guanylyltransferase/ nucleotidyltransferase; K00971 mannose-1-phosphate guanylyltransferase [EC:2.7.7.22]	-	-	3.0e-30	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	gdp-mannose pyrophosphorylase	-	-	1.19097e-30	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Mannose-1-phosphate guanylyltransferase.	EC:2.7.7.13	-	1.19097e-30	85%

Source	KEGGs	Term	e value	Identity
Blast2go	Fructose and mannose metabolism	00051	1.19097e-30	85%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	1.19097e-30	85%
Blast2go	Metabolic pathways	01100	1.19097e-30	85%
Blast2go	Biosynthesis of secondary metabolites	01110	1.19097e-30	85%

Source	ECs	Term	Type	e value	Identity
AutoFact	Mannose-1-phosphate guanylyltransferase (GDP).	EC:2.7.7.22	-	3.0e-30	71%

Source	KEGGs	Term	e value	Identity
AutoFact	Fructose and mannose metabolism	00051	3.0e-30	71%
AutoFact	Amino sugar and nucleotide sugar metabolism	00520	3.0e-30	71%
AutoFact	Metabolic pathways	01100	3.0e-30	71%
AutoFact	Biosynthesis of secondary metabolites	01110	3.0e-30	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	1.19097e-30	85%
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	1.19097e-30	85%
Blast2go	response to ammonium ion	GO:0060359	Biological Process	1.19097e-30	85%
Blast2go	response to ozone	GO:0010193	Biological Process	1.19097e-30	85%
Blast2go	cellulose biosynthetic process	GO:0030244	Biological Process	1.19097e-30	85%
Blast2go	L-ascorbic acid biosynthetic process	GO:0019853	Biological Process	1.19097e-30	85%
Blast2go	response to heat	GO:0009408	Biological Process	1.19097e-30	85%
Blast2go	response to salt stress	GO:0009651	Biological Process	1.19097e-30	85%
Blast2go	mannose-1-phosphate guanylyltransferase activity	GO:0004475	Molecular Function	1.19097e-30	85%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUV9

Fln msg: Distance to subject end: 219 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 83 - 361

Fln protein: MMKFLTEFEAKLGIRIQCSREIEPLGTAGPLALAKDKLIDGSGQPIFVLNSDVICEFPLKEMLEFHKSCGAEASVMVTRVDEP

Protein Length: 84

Fln nts: ATTCATAGGAGTCTCATTACTTGCAAATACGATAGGGATCCTAAGATTGGCTGTTGGCCCATAGAGGTACTCAGAAATTGAAAATCTGGTCATTTGTCTTTTTGGGGTACTAGAGGTTAACATGGCTTTGTTTTCCTCTCTTGCCATCCTTTTGCCTGCACATGTAGTTTTGAATGTAAAATAATGATTTGAATTGCAGAGT_-_ATGATGAAGTTTTTGACAGAGTTTGAAGCCAAATTGGGTATCCGAATCCAATGTTCACGCGAAATTGAGCCTTTGGGCACTGCTGGTCCTCTGGCTTTAGCCAAGGATAAGCTTATTGATGGTTCGGGACAGCCAATTTTTGTATTGAACAGTGATGTAATCTGTGAGTTTCCATTGAAGGAGATGCTAGAGTTCCACAAATCATGTGGTGCAGAAGCCTCTGTAATGGTCACAAGGGTGGATGAGCCAT

Fln Alignment:

sp_v1.1_unigene36084___FELQSMMKFLTEFEAKLGIRIQCSREIEPLGTAGPLALAKDKLIDGSGQPIFVLNSDVICEFPLKEMLEFHKSCGAEASVMVTRVDEP
A9NUV9_______________YQPEVMLSFLKEFEAKLGIKITCSQETEPMGTAGPLALARDKLDDGSGEPFFVLNSDVICEYPLEQMLEFHKKHGGEASIMVTKVDEP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain