SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36064

Length: 927 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene36064

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PWWP domain-containing protein	-	-	9.99995e-41	42%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	31%
Blast2go	pwwp domain-containing protein	-	-	1.26117e-44	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	PWWP	IPR000313	-	1.26117e-44	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6I4L1

Fln msg: Separated hits, possible frame ERROR between 504 and 516, Unexpected STOP codon at 3' end. Distance to subject end: 843 aas, your sequence is shorter than subject: 308 - 1251

Fln protein: RRDLGCHSVMENNKGGVDMPSLQSSCSGADDEEDNIPIGKILIRSKAGDHQKIKQKDFQNMDDIDDNTPLKNSITVKEGRILKKSIAFKEGKNRDKAIGESGYDINLTSKFREGDMVWAKVKSHPWWPGQVYNPAFASAMARSKRKSGHMLIAFFGDSSYGWFMASDxxxxxNYDQKSKQSTSRTFTKAVEESVDELGRRAALGLTCPCRNSSYFKPAKVKGYVMVDIGGYVTPGVYTEKQIDGARTKFNPEIMLSFVRRMAVSPWSAEDRSVSGIKCVAEVLAYRAATVNFPGQGLSRSPENFHML*

Protein Length: 309

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTATGGAGAATAATAAAGGCGGTGTCGATATGCCTAGTTTGCAATCATCTTGTTCAGGCGCCGATGACGAGGAGGACAATATTCCAATAGGGAAAATTTTGATCCGGAGTAAAGCAGGGGATCATCAGAAGATAAAACAGAAAGATTTTCAAAATATGGACGACATTGACGATAATACTCCTTTAAAGAACAGTATTACTGTCAAAGAGGGCAGGATTTTGAAGAAAAGTATTGCTTTCAAAGAAGGAAAGAATAGAGATAAAGCTATTGGGGAGAGTGGCTATGATATTAACCTAACCTCGAAATTTCGTGAGGGAGACATGGTCTGGGCAAAGGTGAAATCCCATCCATGGTGGCCGGGCCAGGTGTACAATCCGGCATTTGCCTCGGCCATGGCACGGAGTAAAAGAAAATCGGGGCATATGTTGATTGCTTTCTTCGGGGACAGTAGCTATGGGTGGTTTATGGCGTCTGATCTxxxxxxxxxxxxCAATTATGATCAAAAGTCGAAGCAATCGACCTCTCGCACTTTCACCAAGGCGGTGGAAGAGTCTGTCGATGAGTTGGGAAGACGAGCTGCGCTGGGCTTGACGTGCCCATGCCGCAATTCTAGCTATTTCAAGCCAGCGAAAGTGAAGGGCTATGTAATGGTCGACATAGGAGGCTACGTGACGCCGGGGGTGTATACAGAGAAGCAAATTGACGGGGCGAGGACTAAATTTAATCCTGAGATAATGCTTTCTTTCGTTAGGCGTATGGCTGTATCACCCTGGAGCGCAGAAGACAGATCCGTTTCGGGGATAAAATGTGTTGCTGAAGTACTTGCGTACCGAGCTGCCACCGTGAACTTCCCGGGGCAAGGACTATCGAGAAGCCCTGAGAATTTCCACATGCTCTGATGCT

Fln Alignment:

sp_v1.1_unigene36064___RDLGCHSVMENNKGGVDMP-----SLQSSCSGADDEEDNIPIGKILIRSKAGDHQKIKQKDFQNMDDIDDNTPLKNSITVKEGRILK-KSIAFKEGKNRDKAIGES---GYDINLTSKFREGDMVWAKVKSHPWWPGQVYNPAFASAMARSKRKSGHMLIAFFGDSSYGWFMASDLxxxxNYDQKSKQSTSRTFTKAVEESVDELGRRAALGLTCPCRNSSYFKPAKVKGYVMVDIGGYVTPGVYTEKQIDGARTKFNPEIMLSFVRRMAVSPWSAEDRSVSGIKCVAEVLAYRAA
F6I4L1_______________RSDGVGASLEDDSGGVDREIESRVSSDSGCRKIVDQEMGTEVSEIK-DGEGAPREGVDQFDSRS-DRKEDALPRVDAHELEGGSVSQYESLLSKFDDYVANGMGGAYGMGTSRASSHALEVGEMVWGKVKSHPWWPGHIFNEALADPLVRRTKREGHVLVAFFGDSSYGWFLPDELxxxxNFAEKSRQTTAKTFLKAVEEAVDEVGRRCGLRVVCQCRNPYTFRPKRVPGYFEVDVPDYETGGIYSADQISNARESFQPEDTLSFVKQLALAPRDSDQKNIRWIKNKATVYAYRRA

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
940		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain