SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36014

Length: 457 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene36014
ATGGGCGGCAGCAGCACTGTTCAAACACCAACTGTAATCTTCGAACCCCGACACTTCATATTTTCAGACTACAGACTTCGGTAGCTCGGCAATGGCGTCGAAGCTCCTAACAATGGCGTCAAGAAGGGCCGCCAGAACTCTCACCAGTGGCGGCCCTGCCGCCTCTTTGTCAACGGCGGCAGCAAGAGCAGAAGAAGAAACGGTGGAGGAAACTGTGGAAGGAATCACAATGAAGGGCGTCAAGATAGCAGGCCGGCCCCTATATCTCGACATGCAGGCCACATCCCCGGTCGATCCTAGGGTTCTGGATAACATGCTGCCGTATTACATGTACCAATACGGAAACCCTCATTCTCGAACACATCTCTTCGGCTGGGAATCCGACAGGGCCGTGGAAAAGGCCAGAGAGCAGGTCGCCGCCCTAATCGGCGCGAGCCCTAAAGAATAATCTTCACCT

Ace file of the UniGene sp_v1.1_unigene36014

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cysteine desulfurylase, putative (EC:2.8.1.7); K04487 cysteine desulfurase [EC:2.8.1.7]	-	-	2.0e-29	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	protein	-	-	1.63866e-40	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cysteine desulfurase.	EC:2.8.1.7	-	1.63866e-40	89%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Thiamine metabolism	00730		1.63866e-40	89%

Source	ECs	Term	Type	e value	Identity
AutoFact	Cysteine desulfurase.	EC:2.8.1.7	-	2.0e-29	60%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Thiamine metabolism	00730		2.0e-29	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	iron-sulfur cluster assembly	GO:0016226	Biological Process	1.63866e-40	89%
Blast2go	cysteine desulfurase activity	GO:0031071	Molecular Function	1.63866e-40	89%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	1.63866e-40	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	1.63866e-40	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	1.63866e-40	89%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	1.63866e-40	89%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	1.63866e-40	89%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AA74

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 333 aas, your sequence is shorter than subject: 119 - 455

Fln protein: MASKLLTMASRRAARTLTSGGPAASLSTAAARAEEETVEETVEGITMKGVKIAGRPLYLDMQATSPVDPRVLDNMLPYYMYQYGNPHSRTHLFGWESDRAVEKAREQVAALIGASPKE*

Protein Length: 120

Fln nts: ATGGGCGGCAGCAGCACTGTTCAAACACCAACTGTAATCTTCGAACCCCGACACTTCATATTTTCAGACTACAGACTTCGGTAGCTCGGCA_-_ATGGCGTCGAAGCTCCTAACAATGGCGTCAAGAAGGGCCGCCAGAACTCTCACCAGTGGCGGCCCTGCCGCCTCTTTGTCAACGGCGGCAGCAAGAGCAGAAGAAGAAACGGTGGAGGAAACTGTGGAAGGAATCACAATGAAGGGCGTCAAGATAGCAGGCCGGCCCCTATATCTCGACATGCAGGCCACATCCCCGGTCGATCCTAGGGTTCTGGATAACATGCTGCCGTATTACATGTACCAATACGGAAACCCTCATTCTCGAACACATCTCTTCGGCTGGGAATCCGACAGGGCCGTGGAAAAGGCCAGAGAGCAGGTCGCCGCCCTAATCGGCGCGAGCCCTAAAGAATAATCTTCACCT

Fln Alignment:

sp_v1.1_unigene36014___MASKLLTMASRRAARTLTSGGPXXXXXXXXXXXXXXXXXXXXXGITMKGVKIAGRPLYLDMQATSPVDPRVLDNMLPYYMYQYGNPHSRTHLFGWESDRAVEKAREQVAALIGASPKE
D5AA74_______________MASKLLSMASRRAARTLVNGRLAASFSTAAARAVEETVEETVEGITMKGVKIAGRPLYLDMQATSPVDPRVLDAMMPFYMYQYGNPHSRTHLFGWESDTAVEKAREQVASLIGASPKE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
90		66	33		0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain