SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene36010

Length: 352 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene36010
CGTGGTGACCTTGTTTGTAGTGGTTTTTTTTTTGGTCGTGGGCATTGTTTCGAACTGTTGTCTGATTCTGCAGAATGGCCACAGAAGAAGAGAGCGGCTCTAAACGTCCTAAGGATTTGCGCCGTTATTGCTGCAAAACTTGTGGAATCACAAGATCAAAGCGCATTCTGCTCAAGCTCCACATAATCTCTAGCCACGGAAGAGAAGCCCTAGAAAATGACGAAAGATTTGCTTCAGAGGTGGAAGGCCAGAGTCATAGGCGGTCTGCATGCGTTTGTCAAGATTGCGGGGCTTCGTTTAATAAACCTGCTCATCTTGAACAGCACAAGTTATCGCATACAGGCCAGAGAAC

Ace file of the UniGene sp_v1.1_unigene36010

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	C2H2-type zinc finger protein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C7G8_ARATH	-	-	2.0e-12	49%
FL-Next	tr=At1g72050; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	48%
Blast2go	tfiiia (transcription factor iiia) 5s rdna binding 5s rrna binding nucleic acid binding transcription factor zinc ion binding	-	-	1.91311e-12	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	5S rDNA binding	GO:0080084	Molecular Function	1.91311e-12	61%
Blast2go	5S rRNA binding	GO:0008097	Molecular Function	1.91311e-12	61%
Blast2go	cytoplasm	GO:0005737	Cellular Component	1.91311e-12	61%
Blast2go	nucleolus	GO:0005730	Cellular Component	1.91311e-12	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, C2H2	IPR007087	-	1.91311e-12	61%
Blast2go	Zinc finger, C2H2-type/integrase, DNA-binding	IPR013087	-	1.91311e-12	61%
Blast2go	Zinc finger, C2H2-like	IPR015880	-	1.91311e-12	61%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: Q84MZ4

Fln msg: Distance to subject end: 319 aas, your sequence is shorter than subject: 92 - 412

Fln protein: MATEEESGSKRPKDLRRYCCKTCGITRSKRILLKLHIISSHGREALENDERFASEVEGQSHRRSACVCQDCGASFNKPAHLEQHKLSHTGQR

Protein Length: 93

Fln nts: CGTGGTGACCTTGTTTGTAGTGGTTTTTTTTTTGGTCGTGGGCATTGTTTCGAACTGTTGTCTGATTCTGCAGA_-_ATGGCCACAGAAGAAGAGAGCGGCTCTAAACGTCCTAAGGATTTGCGCCGTTATTGCTGCAAAACTTGTGGAATCACAAGATCAAAGCGCATTCTGCTCAAGCTCCACATAATCTCTAGCCACGGAAGAGAAGCCCTAGAAAATGACGAAAGATTTGCTTCAGAGGTGGAAGGCCAGAGTCATAGGCGGTCTGCATGCGTTTGTCAAGATTGCGGGGCTTCGTTTAATAAACCTGCTCATCTTGAACAGCACAAGTTATCGCATACAGGCCAGAGAAC

Fln Alignment:

sp_v1.1_unigene36010___KDLRRYCCKTCGITRSKRILLKLHIISSHGREALENDERFASEVEGQSHRRSACVCQDCGASFNKPAHLEQHKLSHTGQR
Q84MZ4_______________KDIRNYLCQYCGISRSKNYLITKHIQSHHQMELEEERDDEACEVDEES--SSNHTCQECGAEFKKPAHLKQHMQSHSLER

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain