SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene35969

Length: 373 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene35969
ATTTGCGTCAGTTGGGTTCTTCAGAGGGTTATTTCCCACTACGCATAATTTGAAGTAGTGCTGCCACCTGACTCATCATGAAGAAAGAAGGGAAGAGCAGTGCGTTATTGCGGTTTAAAATAGGGGAAGGGGTTGAGGTTTCAAGTGATGACGAGGGCTTCAAGGGAGCCTGGTTTCCTGCAACCTTTGTCAAGAAGGCGGGAAGTCGTAATCGATTCGTGATTCAATACAGGGAATTCACCGAGGAAGGCAAACCGAATACAAAACTGCGAGAGATTGTAGAGGTCTCTCATATTAGACCTCAGCCACCAGATCTGAATGGGCAAAGTTTCTGCATTAACGAAGTTGTTGATGCATATGATCGAGATGCGTG

Ace file of the UniGene sp_v1.1_unigene35969

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	agenet domain-containing protein [Arabidopsis thaliana] gb\|AAY34173.1\| At1g09320 [Arabidopsis thaliana]	-	-	2.0e-08	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Blast2go	rna binding protein	-	-	9.2615e-15	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Agenet	IPR008395	-	9.2615e-15	62%
Blast2go	Tudor-like, plant	IPR014002	-	9.2615e-15	62%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXU1

Fln msg: Distance to subject end: 132 aas, your sequence is shorter than subject: 98 - 225

Fln protein: MKKEGKSSALLRFKIGEGVEVSSDDEGFKGAWFPATFVKKAGSRNRFVIQYREFTEEGKPNTKLREIVEVSHIRPQPPDLNGQSFCINEVVDAYDRDA

Protein Length: 99

Fln nts: ATTTGCGTCAGTTGGGTTCTTCAGAGGGTTATTTCCCACTACGCATAATTTGAAGTAGTGCTGCCACCTGACTCATC_-_ATGAAGAAAGAAGGGAAGAGCAGTGCGTTATTGCGGTTTAAAATAGGGGAAGGGGTTGAGGTTTCAAGTGATGACGAGGGCTTCAAGGGAGCCTGGTTTCCTGCAACCTTTGTCAAGAAGGCGGGAAGTCGTAATCGATTCGTGATTCAATACAGGGAATTCACCGAGGAAGGCAAACCGAATACAAAACTGCGAGAGATTGTAGAGGTCTCTCATATTAGACCTCAGCCACCAGATCTGAATGGGCAAAGTTTCTGCATTAACGAAGTTGTTGATGCATATGATCGAGATGCGTG

Fln Alignment:

sp_v1.1_unigene35969___MKKEGKSSALLRFKIGEGVEVSSDDEGFKGAWFPATFVKKAGSRNRFVIQYREFTEEGKPNTKLREIVEVSHIRPQPPDLNGQSFCINEVVDAYDRD
A9NXU1_______________MKRERANMSLKR---GDSVEVSSEEEGFTGAWFPATILRKIG--NVFLVEFRDLMTDDE-KSKLKEKVKAHLIRPEPEALNRQWFFLNEEVDVYDQD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain