SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene35930

Length: 973 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene35930 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9SA71_RICCO	-	-	49%
FL-Next	tr=Nucleotide binding protein, putative; Ricinus communis (Castor bean).	-	-	55%
Blast2go	nucleotide binding	-	-	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SA71

Fln msg: Distance to subject end: 49 aas, your sequence is shorter than subject: 324 - 551

Fln protein: LIYVGNMKGEILIIDTETS*PWLSLKVPGNGLIRQLVFSKCGKYLLANSGDRTIRVFENCLPHNNAARALEELVNASGDSAVTENIKLVGSQCLKLSKEFQDAVNRLPWKAACFSGDSEWVVGAPASKGEHKICIWERSGKLVKISEGPKEGLTDLSWHPIRPLVVSVALSGAIYIWAKDYTENWSAFAPDFKELEENEEYVEREDEFDMMPDTEKVKTAHVDEDEEVDIMTIEKSLDSDSDDSGEGLYYLPTIPLPDSPKQQEQFSGSPGKPENSTPPQSDRSPALDEGEANKTPERSVEQTPDSPLEEEPSLNGRVRRKRKL

Protein Length: 325

Fln nts: CTTAATTTATGTTGGGAATATGAAAGGGGAGATATTGATTATTGACACGGAAACGTCGTGACCTTGGCTGTCACTCAAGGTTCCTGGGAATGGACTGATTAGGCAACTTGTTTTTAGCAAGTGTGGCAAGTATTTGCTTGCTAATTCTGGGGATCGCACAATTCGAGTTTTTGAGAATTGTCTACCTCATAATAACGCAGCTCGTGCTTTAGAAGAATTAGTCAATGCTTCCGGTGACAGTGCAGTGACTGAAAACATTAAGCTGGTGGGATCTCAATGCTTGAAACTTTCAAAAGAATTCCAGGATGCTGTTAACCGTCTTCCCTGGAAGGCTGCATGCTTCAGTGGTGACAGTGAGTGGGTTGTGGGTGCGCCTGCTAGCAAAGGGGAACACAAGATATGTATATGGGAGAGATCTGGAAAGCTTGTCAAAATATCGGAAGGGCCAAAGGAAGGTTTGACAGATTTATCTTGGCATCCCATTCGGCCACTGGTGGTTTCGGTGGCCTTGTCTGGGGCAATTTACATATGGGCCAAAGACTATACAGAAAATTGGAGTGCATTTGCTCCAGATTTCAAAGAGCTAGAGGAAAATGAGGAATATGTTGAGAGAGAAGATGAATTTGATATGATGCCTGACACTGAGAAGGTAAAAACTGCACATGTTGATGAAGATGAAGAGGTTGACATCATGACCATAGAGAAGTCTCTAGATAGCGATTCAGATGATTCTGGTGAAGGGCTATATTATTTACCCACAATTCCATTGCCCGATAGTCCTAAGCAGCAGGAACAGTTTTCAGGAAGCCCCGGTAAACCTGAAAACAGCACTCCTCCTCAGTCAGACAGGTCACCTGCTCTAGATGAAGGGGAAGCTAATAAAACACCAGAGCGTAGTGTCGAACAAACTCCAGATTCTCCTTTAGAAGAAGAGCCGAGCCTAAATGGACGCGTTAGGCGGAAGCGCAAGTTA

Fln Alignment:

sp_v1.1_unigene35930___LIYVGNMKGEILIIDTETS*PWLSLKVPGNGLIRQLVFSKCGKYLLANSGDRTIRVFENCLPHNNAARALEELVNASGDSAVTENIKLVGSQCLKLSKEFQDAVNRLPWKAACFSGDSEWVVGAPASKGEHKICIWERSGKLVKISEGPKEGLTDLSWHPIRPLVVSVALSGAIYIWAKDYTENWSAFAPDFKXXXXXXXXXXXXXEFDMMPDTEKVKTAHVDEDEEVDIMTIEKXXXXXXXXSGEGLYYLPTIPLPDSPKQQEQFSGSPGKPENSTPPQSDRSPALDEGEANKTPERSVEQTPDSPLEEEPSLNGRVRRKRK
B9SA71_______________LVYVGNSKGEVLIIDHKSIQIYAMISIPGGAVIKNIVFSRNGQYLLTNSNDRTIRIYENLLPQKDGCTALADMSRTVDEVDVVEKMKTVGSKCLALFREFQDSITKMHWKAPCFSGDGEWVIGGSASKGEHKIYIWDRAGYLVKILEGPKEALIDLAWHPVHPIVVSVSLTGLVYIWAKDYTENWSAFAPDFKELEENEEYVEREDEFDLVPETEKVKESDVNEDEEVDIVTVEKDAFSDSDMSQEELCFLPAVPCPDASEQQDKCVGSSSKLMDSNHSGS----PLSEGAGQ---NGMAMNHASSPLEEDTG-GMRMKRKRK

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
725	83		16		0.994513
854		83		16	0.994512
859		83	16		0.994513
863	80	20			0.995505
865	80		20		0.995505
866	80	20			0.995505
871			20	80	0.995498
873		20	80		0.995498
874	20	80			0.995498
876			20	80	0.995498
878	80	20			0.995498
879			20	80	0.995498
903	33		66		0.997452
905			66	33	0.997452
908	66			33	0.997452
913		66	33		0.997452
914	66			33	0.997452
916		25	75		0.99649
917		25	75		0.99649
919		75		25	0.99649
920	75			25	0.99649
922			75	25	0.99649

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain