SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene35878

Length: 558 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene35878
CGTCGTGACCTTGGCTGTCACTCATCTGAGGATGCCGAATTTCTAGGCATATTCAATTCTGTACCATGCAGGTATCCTCCTGCCCGTGAGAAATGTGCAGGGCCATCCTGTAACAACACATACAAATATAGAGATTCAAAGTCTAATCTTCCTCTATGCAGTCTTCTTTGCTACAGGGCAATCCATAATATGGCACAGCCTCTCTCAACTCATTAGTTGTGTGATTCTCTTTTCCTCTATTTCATTTCTTTCCAGAAGTAAAAATACTAATGAAGGTGAATGTAATGTTACTGTATGGTTGACCCGCACCAAAAATACTCACCGGGAGGAGGTCGCTCGTGAATGTTAGAATGGGAAGTCGCTTGTGAATGTTAGAATGGGAAGTGCTAAATAACAAGAGGACATGTACAAAAAGAATGCTGCTATAAATATCATTCTGGGAGAATGCATTGGGTTCTTTGTAATTTTCTATTTACAATGAGATTAATATATTTATTCCAGTTTAGATACTGTTGTACATTCATTAGCAAGCAAGTCTGAAACCATTACGAGGAACTG

Ace file of the UniGene sp_v1.1_unigene35878 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PAPA-1-like family protein / zinc finger (HIT type) family protein [Arabidopsis thaliana] dbj\|BAC42342.1\| unknown protein [Arabidopsis thaliana]	-	-	5.0e-14	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	protein	-	-	5.73671e-31	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, HIT-type	IPR007529	-	5.73671e-31	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PS52

Fln msg: your sequence is shorter than subject: 72 - 407

Fln protein: RRDLGCHSSEDAEFLGIFNSVPCRYPPAREKCAGPSCNNTYKYRDSKSNLPLCSLLCYRAIHNMAQPLSTH*

Protein Length: 73

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTGAGGATGCCGAATTTCTAGGCATATTCAATTCTGTACCATGCAGGTATCCTCCTGCCCGTGAGAAATGTGCAGGGCCATCCTGTAACAACACATACAAATATAGAGATTCAAAGTCTAATCTTCCTCTATGCAGTCTTCTTTGCTACAGGGCAATCCATAATATGGCACAGCCTCTCTCAACTCATTAG___TTGTGTGATTCTCTTTTCCTCTATTTCATTTCTTTCCAGAAGTAAAAATACTAATGAAGGTGAATGTAATGTTACTGTATGGTTGACCCGCACCAAAAATACTCACCGGGAGGAGGTCGCTCGTGAATGTTAGAATGGGAAGTCGCTTGTGAATGTTAGAATGGGAAGTGCTAAATAACAAGAGGACATGTACAAAAAGAATGCTGCTATAAATATCATTCTGGGAGAATGCATTGGGTTCTTTGTAATTTTCTATTTACAATGAGATTAATATATTTATTCCAGTTTAGATACTGTTGTACATTCATTAGCAAGCAAGTCTGAAACCATTACGAGGAACTG

Fln Alignment:

sp_v1.1_unigene35878___SEDAEFLGIFNSVPCRYPPAREKCAGPSCNNTYKYRDSKSNLPLCSLLCYRAIHNMAQPLSTH
C0PS52_______________SEDAEFLGIFNSVPCRYPPAREKCAGPSCNNTYKYRDSKSNLPLCSLLCYRAIHDMAQPLSTH

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
307		25	75		0.996473
330	75			25	0.996473
334	75			25	0.996473
335	75		25		0.996473
338	25	25		50	0.995533
341		75	25		0.996473
343	75	25			0.996473
348		75	25		0.996473
350	83	16			0.994512
352		16		83	0.994512
382	20		80		0.995493
408	20	80			0.995493
409	80		20		0.995493
413		20	80		0.995493
417		20	80		0.995493
421	80		20		0.995493
423		20		80	0.995493
429			20	80	0.995493
539		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain