SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene35842

Length: 1198 nt

Origin of reads: Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene35842 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Kinase family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KHN6_ARALY	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	kinase family protein	-	-	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	63%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	63%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	63%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	63%
Blast2go	Protein kinase-like domain	IPR011009	-	63%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	63%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPF9

Fln msg: your sequence is shorter than subject: 320 - 385

Fln protein: IDYCPGGDLNGLRRRQTEKTFSESIIRFYAAEIVLALEHLHSLGIVYRDLKPENVLIQGSGHVMLTDFDLSTCLDAPCKQFTGPQGRSSVQPRRVLGLGHMNSFVSYIKKSKSGSAQLSPAINPCATAPGRLNSFAGTDEYVSPEMVSGTGHEFAVDWWALGILLYEMLYGYTPFKGSTRKETFYNILVKKPQFARPWTPLRDLIFRLLEKEPEKRLGFCHGVHHIKSHAFFRGLDWDGIHSLSRPPFVPSLFSLDDMKAMEGVDIEECLENLDTKFAFRLNSHKHSSRSKEEDSTEDAPQNWVERLSRAKEGNAYGVF*

Protein Length: 321

Fln nts: CATAGACTACTGCCCCGGCGGGGATCTTAACGGTCTGAGACGCAGGCAGACTGAGAAGACATTTTCCGAGTCCATAATTCGGTTCTATGCAGCGGAGATTGTATTGGCACTGGAGCATCTGCACAGCCTGGGGATCGTGTACAGAGATCTGAAGCCCGAGAACGTGCTGATACAGGGCAGCGGCCATGTCATGCTCACCGATTTCGATCTCTCCACCTGTCTGGACGCCCCCTGCAAACAGTTCACCGGCCCGCAAGGAAGATCCTCTGTGCAGCCCAGGCGCGTCCTGGGCCTCGGTCATATGAACTCCTTTGTGTCTTACATCAAGAAGTCGAAATCTGGCTCGGCTCAGCTGTCTCCTGCCATAAATCCTTGTGCCACCGCTCCCGGGAGGCTGAATTCGTTCGCTGGCACGGACGAATACGTATCTCCCGAGATGGTGAGCGGGACGGGGCACGAATTCGCAGTGGACTGGTGGGCGCTGGGGATTCTTCTCTACGAAATGCTCTACGGCTACACGCCCTTTAAGGGGAGCACCAGGAAGGAAACTTTCTACAACATTCTCGTCAAGAAACCCCAATTTGCGCGTCCCTGGACGCCATTACGGGACCTCATTTTCAGATTGCTGGAGAAGGAACCAGAGAAGAGATTGGGGTTCTGCCACGGAGTTCACCACATAAAAAGCCATGCTTTCTTCAGGGGACTCGACTGGGACGGCATTCACAGCTTGTCCAGACCTCCCTTTGTCCCCTCTCTCTTTTCCCTCGACGACATGAAGGCGATGGAGGGCGTCGACATTGAAGAATGTCTCGAAAACCTAGACACAAAATTCGCCTTTAGGCTCAACAGTCACAAGCACAGCAGCAGATCGAAGGAGGAGGATTCCACAGAGGACGCTCCCCAGAATTGGGTGGAGAGATTGTCGAGAGCCAAAGAGGGCAACGCATATGGAGTATTTTAA___TATAATCGAAATGGCAAAATTTCTTTGCTTTGTATCTGAAAAAAAATTGTAAAGAGGGAGATTGCCTTTCGTACAATGTAAAGTATTGTCACTCTTAGCTGTTAGCAGAGAGCAGCAAGATCTGATCTGAGCAGAGAGCAAAGTTAAGGCTCATCAAGGCTAATCGCTCGTTGGGAGTGTTGCGGATATCAATGTAAATGTTTGAATTTTCATTGAATTTTGACTTTTGCGCTTTGC

Fln Alignment:

sp_v1.1_unigene35842___IDYCPGGDLNGLRRRQTEKTFSESIIRFYAAEIVLALEHLHSLGIVYRDLKPENVLIQGSGHVMLTDFDLSTCL---------------DAPCKQFTGPQGRSSVQPRRVLGLGHMNSFVSYIKKSKSGSAQLS--PAINPCATAPGRLNSFAGTDEYVSPEMVSGTGHEFAVDWWALGILLYEMLYGYTPFKGSTRKETFYNILVKK-PQFARPWTPLRDLIFRLLEKEPEKRLGFCHGVHHIKSHAFFRGLDWDGIHSLSRPPFVPSLFSLDDMKAM--EGVDIEECLEN
A9NPF9_______________MSYCSGGDLNTLRQRQKDRKFSESAARFYAAEVVLALEYLHQHGILYRDLKPENILLQADGHIMITDFDLSLMINNSQESRAKDSYRDQNGSCKKKT-KSFLAKLNPGHVGAKDCMNASAMITTKQDDSAKETSFCHLDGRKESVYEQAHSFVGTEEYVAPEILWGKGHGIAVDWWAFGVLLYEMVYGKTPFKGCNRKETFYNILCKEPPQLSEHSSPLKDLLRRLLVKEPTLRLGFNSGAQEIKNHEFFEGVRWDELEYVSRPPFVPPPFSFEHSRIVMDDSVHTIEMFEN

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
508	75			25	0.996473
510	25	75			0.996473
511	75		25		0.996473
514	25		75		0.996473
516	20			80	0.995505
517			20	80	0.995505
518		20		80	0.995505
519		20		80	0.995505
520	20			80	0.995505
522			25	75	0.996483
525		20	80		0.995499
526	20		80		0.995499
527		20		80	0.995498
532			20	80	0.995498
793	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain