SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene35829

Length: 351 nt

UniGene Fasta

>sp_v1.1_unigene35829
CGTCGTGACCTTGGCTGTCACTCACATTTCTACAACAGAGGCCGATGAGCTAGCTGCGAAGCTGACTGATGAGCAAAGGAGAAACCTGCCTATGCCAGGGCAAGTTGATTTTATCAATGGTGGGCCACCTTGTCAGGGATTTTCTGGAATGAATAGATTCAATCAGAGAGCTTGGAGTAAAGTGCAATGTGAGATGATCTTAGCATTTCTGTCATATGCTGATTATTTTCGACCGAGATTCTTTCTTCTGGAGAATGTTAGGAATTTTGTGGCTTACAACAAAGGTCAAACATTCCGACTCACTCTGGCGTCACTCTTGGAGATGGGTTACCAGGTTCGTTTTGGAGTTCT

Ace file of the UniGene sp_v1.1_unigene35829

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA (cytosine-5)-methyltransferase 1 n=2 Tax=Arabidopsis RepID=DNMT1_ARATH	-	-	85%
FL-Next	sp=DNA (cytosine-5)-methyltransferase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	85%
Blast2go	cytosine-5 dna methyltransferase	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	maintenance of DNA methylation	GO:0010216	Biological Process	93%
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	93%
Blast2go	DNA methylation on cytosine within a CG sequence	GO:0010424	Biological Process	93%
Blast2go	DNA mediated transformation	GO:0009294	Biological Process	93%
Blast2go	regulation of gene expression by genetic imprinting	GO:0006349	Biological Process	93%
Blast2go	zygote asymmetric cytokinesis in embryo sac	GO:0010069	Biological Process	93%
Blast2go	transferase activity	GO:0016740	Molecular Function	93%

Source	InterPros	Term	Type	e value	Identity
Blast2go	C-5 cytosine methyltransferase	IPR001525	-	0.0	93%
Blast2go	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	0.0	93%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P34881

Fln msg: Distance to subject end: 263 aas, your sequence is shorter than subject: 116 - 1534

Fln protein: VVTLAVTHISTTEADELAAKLTDEQRRNLPMPGQVDFINGGPPCQGFSGMNRFNQRAWSKVQCEMILAFLSYADYFRPRFFLLENVRNFVAYNKGQTFRLTLASLLEMGYQVRFGV

Protein Length: 117

Fln nts: CGTCGTGACCTTGGCTGTCACTCACATTTCTACAACAGAGGCCGATGAGCTAGCTGCGAAGCTGACTGATGAGCAAAGGAGAAACCTGCCTATGCCAGGGCAAGTTGATTTTATCAATGGTGGGCCACCTTGTCAGGGATTTTCTGGAATGAATAGATTCAATCAGAGAGCTTGGAGTAAAGTGCAATGTGAGATGATCTTAGCATTTCTGTCATATGCTGATTATTTTCGACCGAGATTCTTTCTTCTGGAGAATGTTAGGAATTTTGTGGCTTACAACAAAGGTCAAACATTCCGACTCACTCTGGCGTCACTCTTGGAGATGGGTTACCAGGTTCGTTTTGGAGTTCT

Fln Alignment:

sp_v1.1_unigene35829___ISTTEADELAAKLTDEQRRNLPMPGQVDFINGGPPCQGFSGMNRFNQRAWSKVQCEMILAFLSYADYFRPRFFLLENVRNFVAYNKGQTFRLTLASLLEMGYQVRFGV
P34881_______________VSTTEANELAAKLTEEQKSTLPLPGQVDFINGGPPCQGFSGMNRFNQSSWSKVQCEMILAFLSFADYFRPRYFLLENVRTFVSFNKGQTFQLTLASLLEMGYQVRFGI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain