SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene35779

Length: 960 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene35779 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	xaa-pro dipeptidase, putative (EC:3.4.13.9); K01262 X-Pro aminopeptidase [EC:3.4.11.9]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	31%
Blast2go	metallopeptidase m24 family protein	-	-	77%

Source	ECs	Term	Type	e value	Identity
AutoFact	Xaa-Pro aminopeptidase.	EC:3.4.11.9	-	0.0	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	peptidase activity, acting on L-amino acid peptides	GO:0070011	Molecular Function	0.0	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidase M24, structural domain	IPR000994	-	0.0	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUB9

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 198 - 497

Fln protein: WRWS*WECHPLQSK*PTDQDGEMVLMDVGCEVNGYVSDLTRTWPPCGSYSPCQRELYELILDTANECLKLCKPGVSLRQIHSYSVQLLSKGLTELGILKNSPSMLQSYWKLNPTSIGHYLGMDVHDCSSINNDRLLQPGVEITIEPGVYIPVNSNAPERFRGIGIRIEDEVLITDSGHEVLTASVPREIKQIEFLLC*

Protein Length: 199

Fln nts: TTGGAGGTGGAGCTAATGGGAGTGTCATCCATTACAGTCGAAATGACCAACAGATCAAGATGGAGAGATGGTTTTGATGGATGTTGGATGTGAAGTCAATGGCTATGTCAGTGACCTGACTCGGACATGGCCTCCTTGTGGTAGCTATTCTCCTTGTCAACGAGAGCTGTATGAGCTCATCTTGGACACTGCTAATGAATGTTTGAAGCTGTGTAAACCAGGAGTGAGTCTGCGCCAAATACATTCGTATTCTGTCCAGCTATTATCCAAAGGTCTGACTGAACTTGGAATTCTGAAGAATTCTCCAAGCATGCTCCAATCTTATTGGAAGTTGAACCCAACATCAATAGGCCATTATCTAGGAATGGATGTCCATGATTGCTCTTCAATAAACAATGACCGTTTGCTTCAGCCAGGCGTTGAGATTACGATTGAACCAGGTGTCTATATTCCAGTCAATAGCAATGCACCAGAAAGGTTTCGAGGGATAGGAATTAGGATAGAAGATGAAGTCCTTATTACAGATTCTGGCCATGAGGTCCTTACTGCTTCAGTTCCTAGAGAAATTAAACAGATTGAATTTCTGTTGTGCTAA___AGATTGAGATTGCCCTTTCTGGGGTGATGATTCTTCCCAGGTGTAGCGTAATCTAATGAGGGCGAGTGACCCTTAAGAAAAAATGCGCTCAAAATAAAATTTCCAGAATTCATTGTTTCCAAGTCATGTTCAATATGATGGTTTGAGTGAGGACTCCGGCAGGAAATATTATTTATCTCCGTGCAATGAGTATCGATGGTGCTGAATTGTCAAATCATATTATTAAAGAAACCATAGTTTATTCCTTCCCTGCCGTGCAAACGAAATTGAACTTCTATGCATAGATTGACAGTGGGTCTCAGAGTGCTACTTTGAAATGAACATTAAACATGTTTTATAAAATAGACGAATTTATTCCCCAAAAA

Fln Alignment:

sp_v1.1_unigene35779___TDQDGEMVLMDVGCEVNGYVSDLTRTWPPCGSYSPCQRELYELILDTANECLKLCKPGVSLRQIHSYSVQLLSKGLTELGILKNS-PSMLQSYW--KLNPTSIGHYLGMDVHD---------------CSSINNDRLLQPGVEITIEPGVY------IPV----------NSNAPERFRGI-GIRIEDEVLITDSGHEVLTASVPREIKQIE
A9NUB9_______________TLKDGDMALLDMGAEYYFYGSDITCSFPVNGKFTDDQRVVYNAVLGAHEAVISKMKPGVSWVDMHKLAESVIITSLKDANILLGTVEEMLEKRLGAVFMPHGLGHFLGLDTHDPGGYVKGLERPKEPGLRSLRTVRVLQEGMFVTVEPGCYFIDATLVPAMENPDTSCFFNKQVIARFQKFGGVRIESDVIVTATGCENLT-NVPRETWEIE

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
103		66	33		0.997452
159	75		25		0.996473
245		25		75	0.996473
259		25		75	0.996473
272	75	25			0.996474
298		25		75	0.996473
414	75			25	0.996473
421		25		75	0.996473
426	80			20	0.995498
428	20	80			0.995498
429		20		80	0.995498
430		80	20		0.995498
432		20		80	0.995498
444		25	75		0.996478
445		25		75	0.996478
446	75	25			0.996478
449	66		33		0.997452
457			33	66	0.997452
458		33		66	0.997452
461	25			75	0.996476
462		75	25		0.996476
463			25	75	0.996476
466	25			75	0.996476
467	75	25			0.996476
468			25	75	0.996476
469	25	75			0.996476
471			25	75	0.996476
491	33	66			0.997454
507		66	33		0.997464
509	66	33			0.997464
510	33			66	0.997464
511		33		66	0.997476
540		33	66		0.997476
546	50			50	1.0
593	66		33		0.997452
620		33		66	0.997452
660	33	66			0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain