SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene35734

Length: 519 nt

Origin of reads: Biogeco_2 Uagpf

UniGene Fasta

>sp_v1.1_unigene35734
AGAGGAAGTATACTGGTCTGTCAAAATGTAAGATCATAGAGCAGCTTCTGAGAATGGTATCATACAAAGAATCGATGCAACAGGAGAGTAAGCCAGCTGCCCCATTACAGTCACCCACGGCTAACCCTCAGAATATATCTCGGAAGCAGAAGAAGAAGGAACCTCCATCTACTACACATACATCACCTATCCCTGATGAAAAAGGTCATGATAATACCTTATTCTGTAAAAATTTAGCTTGCAGAGCTATTTTAAGCTCACAAGATAGATTTTGCAAGCGATGCTCATGTTGCATTTGCTACCAGTTCGATGACAACAAGGACCCCAGTCTTTGGCTAGTGTGTACCTCCGAGCCCCCACATGCCGAGGATTCTTGTGGTTTCTCATGTCATGTTGAATGCGTTCTCAAGCATGAAAGATCTCGAACCTTTAAGGATGGGCTATCAATGGAGCTAGATGGAAGCTACTGTTGCATGTCTTGCGGAAAAGTCAATGGGCTGATTGGATGCTGGAGAAAAC

Ace file of the UniGene sp_v1.1_unigene35734

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1423 domain containing protein	-	-	2.0e-08	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	24%
Blast2go	protein	-	-	0.0	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	0.0	63%
Blast2go	PcG protein complex	GO:0031519	Cellular Component	0.0	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV71

Fln msg: Distance to subject end: 271 aas, your sequence is shorter than subject: 172 - 623

Fln protein: RKYTGLSKCKIIEQLLRMVSYKESMQQESKPAAPLQSPTANPQNISRKQKKKEPPSTTHTSPIPDEKGHDNTLFCKNLACRAILSSQDRFCKRCSCCICYQFDDNKDPSLWLVCTSEPPHAEDSCGFSCHVECVLKHERSRTFKDGLSMELDGSYCCMSCGKVNGLIGCWRK

Protein Length: 173

Fln nts: AGAGGAAGTATACTGGTCTGTCAAAATGTAAGATCATAGAGCAGCTTCTGAGAATGGTATCATACAAAGAATCGATGCAACAGGAGAGTAAGCCAGCTGCCCCATTACAGTCACCCACGGCTAACCCTCAGAATATATCTCGGAAGCAGAAGAAGAAGGAACCTCCATCTACTACACATACATCACCTATCCCTGATGAAAAAGGTCATGATAATACCTTATTCTGTAAAAATTTAGCTTGCAGAGCTATTTTAAGCTCACAAGATAGATTTTGCAAGCGATGCTCATGTTGCATTTGCTACCAGTTCGATGACAACAAGGACCCCAGTCTTTGGCTAGTGTGTACCTCCGAGCCCCCACATGCCGAGGATTCTTGTGGTTTCTCATGTCATGTTGAATGCGTTCTCAAGCATGAAAGATCTCGAACCTTTAAGGATGGGCTATCAATGGAGCTAGATGGAAGCTACTGTTGCATGTCTTGCGGAAAAGTCAATGGGCTGATTGGATGCTGGAGAAAAC

Fln Alignment:

sp_v1.1_unigene35734___CKNLACRA----------ILSSQDRFCKRCSCCICYQFDDNKDPSLWLVCTSEPPHAEDSCGFSCHVECVLKHER--SRTFKDGLSMELDGSYCCMSCGKVNGLIGCWRK
A9NV71_______________CRNIACQSQLPADDCSCEVCSTKSGFCSLCMCVICSKFDFEVNTCRWVGC--------DTCSHWTHTDCAIRAGQISMGTSLKGVAGSSEMLFRCRACKRTSELLG-WVK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain