SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene35700

Length: 1162 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene35700 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein, putative	-	-	2.0e-36	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	21%
Blast2go	pentatricopeptide repeat-containing protein	-	-	2.5502e-40	56%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	2.5502e-40	56%
Blast2go	embryo development	GO:0009790	Biological Process	2.5502e-40	56%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	2.5502e-40	56%
Blast2go	cell division	GO:0051301	Biological Process	2.5502e-40	56%
Blast2go	protein binding	GO:0005515	Molecular Function	2.5502e-40	56%
Blast2go	nucleus	GO:0005634	Cellular Component	2.5502e-40	56%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	2.5502e-40	56%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAN4

Fln msg: Distance to subject end: 49 aas,

Fln protein: MGIYRRLLLKAGSGSLLAHEMCISGRRAMRGVVMSQAALDAAAERRRRKRKLRIDPPLSALQRNRDYARQQAQRNPNLPESINVLVGDRLSLHNRIQTLCRAGKLQEAIEGVKAAMFSRIRPTVFTCNSVLGALHRAGEHADLASLFNFVKQSGVIPNLVTYNIVLSTHCEKLDMDASFNMLKTIYEAEMTPSNVTFNHLMKAHFRLQKYEEVMRLFWEMLEKCHGADPPTYAATIEGFCKGGAMKQAEELYMEMRRRGSIFSEPVFCNLIGGFFNAGEIQKALDVFDFIPEKLERTVMSYNAVMDGFCKV

Protein Length: 312

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGGCTTAATGCTTAATGCTATTTACACAAATTAAGGCTTCACGGATGTTTGCTTCATTCTAGGGGTTTAATGTGATTTACCCACCATTTGTTTGCTTCCATTCTCGGGCTATATAAATGATAAATCCAGTAGAGATGGGGGGGTATCACCACAGAGGTTCCGAGAGGGTTTAGGTTTGTTTTGGAGAGTAGCAGCCGCGTCT_-_ATGGGGATTTACAGGAGGCTGTTGTTGAAGGCAGGTTCGGGCTCGTTGTTAGCCCATGAGATGTGCATTAGTGGGCGGAGGGCCATGCGGGGTGTGGTGATGTCTCAGGCGGCACTGGACGCTGCGGCGGAGAGGCGACGAAGGAAGAGGAAGCTGCGGATCGATCCTCCCCTGAGTGCATTGCAGCGTAACCGGGATTACGCCAGGCAGCAGGCGCAGAGAAATCCCAACCTCCCTGAGTCGATAAACGTGCTGGTGGGGGACAGGCTGAGCCTCCACAACCGCATCCAAACCCTGTGCAGGGCGGGCAAACTGCAGGAGGCGATAGAGGGCGTGAAGGCAGCCATGTTTTCTAGAATTCGCCCCACCGTTTTCACCTGCAACTCCGTCCTCGGCGCCCTCCACCGAGCAGGTGAACACGCTGACCTGGCTTCACTGTTCAATTTTGTAAAGCAATCTGGTGTTATTCCCAATCTTGTTACATACAATATAGTTTTGAGTACACATTGCGAAAAACTAGACATGGATGCCTCCTTCAACATGCTTAAGACCATATATGAAGCTGAAATGACACCCAGTAATGTGACATTCAATCATTTGATGAAGGCCCATTTTAGACTCCAGAAGTACGAGGAGGTCATGCGGCTTTTCTGGGAAATGCTTGAAAAGTGCCACGGGGCCGATCCACCTACATATGCTGCTACTATTGAAGGTTTCTGCAAGGGGGGTGCTATGAAGCAGGCAGAGGAGCTTTATATGGAAATGAGGAGGAGGGGTTCCATATTTAGTGAGCCAGTCTTTTGTAATTTGATTGGGGGGTTTTTCAATGCGGGGGAGATTCAAAAGGCATTGGACGTTTTTGACTTCATTCCGGAGAAGCTCGAGCGGACTGTCATGTCGTATAATGCTGTGATGGACGGTTTCTGCAAGGTCGG

Fln Alignment:

sp_v1.1_unigene35700___NRIQTLCRAGKLQEAIEGVKAAMFSRIRPTVFTCNSVLGALHRAGEHADLASLFNFVKQSGVIPNLVTYNIVLSTHCEKLDMDASFNMLKTIYEAEMTPSNVTFNHLMKAHFRLQKYEEVMRLFWEMLEKCHGADPPTYAATIEGFCKGGAMKQAEELYMEMRRRGSIFSEPVFCNLIGGFFNAGEIQKALDVFD-FIPEKLERTVMSYNAVMDGF
D5AAN4_______________NLIGGFFKAGEIYKALD-VFHFIPEKFERTVMSYNAVMDGFCKAGQLQEALQYLDKLPENNLGPNATSYTILISGYITQGKLQEAEKLFRSMAEKGCIPDACVYNTLLDAYFKEGMFAEAEKLLEEMVTEHREPDSVTYTMLINEFTKQGKMEGALKIFANMIEAGLKPDVTVYNKWFGLLCKESKFDEAQKLFQRMVDGGQNPDVGTYDILTEGF

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
504			50	50	1.0
509	50		50		1.0
514		50	50		1.0
515	50		50		1.0
887	66		33		0.997452
971	66			33	0.997452
972		66	33		0.997452
973	33	66			0.997452
974			33	66	0.997452
975	66			33	0.997452
976	66		33		0.997452
979	33	66			0.997452
980		66	33		0.997452
981		33		66	0.997452
983	33			66	0.997452
984	33	66			0.997452
988	75	25			0.996476
991		75	25		0.996476
992	25			75	0.996476
1008	33	66			0.997452
1009	33	66			0.997452
1010		66	33		0.997452
1011		66	33		0.997452
1012	66			33	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain