SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene35694

Length: 470 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene35694
CGTCGTGACCTTGGCTGTCACTCATCTTATTACTTGTCCCCACGCCAATTTTTGTACAGTTCTGAAAGTTCAGGACTCTTAAATCCTCGCGAATTTTTCGGAGTTCCCATATTAGGAGGGGATTTCTATCGTTTCATTAGGTTTGGCTGCCGAGGGAGGGAAGGTTTGTGAGACTGCGGTGCAGTTTAACTCGAAACCCTAAGCACGGTGTTAGTTGAGAAAAGGGAGGAGAAATGGTTGATTCTCCGAATGGAATTGATGACAAAGTGGCATATTTTCAAGCCATTACTGGTTTAGATGATCGGGCATTAAGTATCCAGATCCTGGAAGCTCATGGTTGGGACTTGGATTCGGCCATTTCTGAAATTACAGACGATGGAAATTCCTCATCTGCTAACTTGGCATCTGGGTCTGCAAATAATCCTTCGTCGGTTGGGAATTTTACTTCAGGATCATGGCAAGGAATAGAA

Ace file of the UniGene sp_v1.1_unigene35694 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UBX domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RYS0_RICCO	-	-	1.0e-06	60%
FL-Next	tr=UBX domain-containing protein, putative; Ricinus communis (Castor bean).	-	-	0.0	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	UBA-like	IPR009060	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9RYS0

Fln msg: Distance to subject end: 396 aas, your sequence is shorter than subject: 79 - 471

Fln protein: MVDSPNGIDDKVAYFQAITGLDDRALSIQILEAHGWDLDSAISEITDDGNSSSANLASGSANNPSSVGNFTSGSWQGIE

Protein Length: 80

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTATTACTTGTCCCCACGCCAATTTTTGTACAGTTCTGAAAGTTCAGGACTCTTAAATCCTCGCGAATTTTTCGGAGTTCCCATATTAGGAGGGGATTTCTATCGTTTCATTAGGTTTGGCTGCCGAGGGAGGGAAGGTTTGTGAGACTGCGGTGCAGTTTAACTCGAAACCCTAAGCACGGTGTTAGTTGAGAAAAGGGAGGAGAA_-_ATGGTTGATTCTCCGAATGGAATTGATGACAAAGTGGCATATTTTCAAGCCATTACTGGTTTAGATGATCGGGCATTAAGTATCCAGATCCTGGAAGCTCATGGTTGGGACTTGGATTCGGCCATTTCTGAAATTACAGACGATGGAAATTCCTCATCTGCTAACTTGGCATCTGGGTCTGCAAATAATCCTTCGTCGGTTGGGAATTTTACTTCAGGATCATGGCAAGGAATAGAA

Fln Alignment:

sp_v1.1_unigene35694___IDDKVAYFQAITGLDDRALSIQILEAHGWDLDSAISEITDD
B9RYS0_______________VADKLAYFQAITGLEDPDLCTEILQAHGWDLELAISSFTSN

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
337			66	33	0.997452
338	66		33		0.997452
340	66		33		0.997452
341		66		33	0.997452
344		33		66	0.997452
352	75		25		0.996478
355	25	75			0.996486
357		75	25		0.996486
358	25			75	0.996478
360		75	25		0.996478
418			66	33	0.997453
420	66	33			0.997455
425	66			33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain