SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene35594

Length: 920 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene35594 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	27%
Blast2go	dna binding	-	-	9.70355e-23	44%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, BED-type predicted	IPR003656	-	9.70355e-23	44%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5AWE7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 751 aas, your sequence is shorter than subject: 306 - 1060

Fln protein: IVIQNSDP*Q*SKTVILTRLLHNLDSL*YICLVDCCLHSIF*IFGSFLNLIFYCLSQEPQIKHKFKATTMPRETDFAWAYCDKIHGDPRVLCKFCKTKCSGGIYRFKFHLAQIPGHDIGICSKVDDNVKHQAALALDMLEQHNAKKAKQNTEIGTVGVDTFSATSPMSPQSVESSMSFPSFPHMPPRPSQTQSHASPSTPSFNTGGGNINTFFAPRTKPGSQPTLDGTGWKKNIHSQARKAIANFWYYSDIPFHCARSPYWQAMIDAIAIAGPGFKAPTSESLRTDTLLESVEDVMLVLAESQSSW

Protein Length: 307

Fln nts: ATAGTGATCCAAAACAGTGATCCATAACAGTGATCCAAAACAGTGATCCTCACTCGCCTTTTGCATAATCTCGATTCTCTATAATATATATGTTTAGTTGACTGTTGTTTACATAGCATATTTTAAATTTTTGGATCATTTTTAAATTTGATTTTTTATTGTCTTTCACAGGAGCCACAAATTAAGCACAAGTTCAAAGCAACAACAATGCCGAGGGAGACGGACTTTGCTTGGGCTTATTGTGACAAGATTCACGGAGACCCCAGGGTCCTTTGTAAATTTTGCAAAACgAAATGTAGTGGAGGCATTTATAGATTCAAGTTCCACCTTGCACAAATACCTGGCCATGATATAGGTaTTTGtAGCAAgGTTGACGATAATGTCAAAcACCAAGCagCCTTGGCCCTTGAtATGTTAGAgCAaCATAATGCCAAGAAAGCAAAGCAAAATACTGAAATAGGAACTGTTGGAGTTGATACTTTTTCTGCCACTAGCCCCATGTCACCTCAATCTGTTGAATCCTCAATGTCGTTCCCAAGTTTTCCACACATGCCTCCAAGGCCAAGTCAAACTCAAAGCCATGCGAGTCCTTCAACTCCTTCCTTCAACACTGGAGGTGGAAACATAAACACCTTTTTTGCTCCCCGCACAAAACCCGGTTCCCAACCTACCTTGGATGGCACTGGTTGGAAAAAAAATATCCATAGTCAGGCAAGGAAGGCCATTGCTAACTTTTGGTACTATTCTGACATACCTTTCCACTGTGCCAGAAGTCCTTATTGGCAAGCTATGATTGATGCAATTGCTATTGCAGGTCCAGGGTTCAAAGCCCCTACATCAGAGAGCCTTAGGACAGATACGTTGTTAGAGAGTGTTGAAGATGTCATGCTTGTGCTAGCTGAGTCCCAATCATCATGGGT

Fln Alignment:

sp_v1.1_unigene35594___LNLIFYCLSQEPQIKHKFKATTMPRET--------DFAWAYCDKIHGDPRVLCKFCKTKCSGGIYRFKFHLAQIPGHDIGICSKVDDNVKHQAALALDMLEQHNAKKAKQNTEIGTVGVDTFSATSPMSPQSVEXXXXXXXXXXXXXXXSQTQSHASPSTPSFNTGGGNINTFFAP---------RTKPGSQPTLDGTGWKKNIHSQARKAIANFWYYSDIPFHCARSPYWQAMIDAIAIAGPGFKAPTSESLRTDTLLESVEDVMLVLAESQSSW
A5AWE7_______________INFVDHFLNQGAPAEHKSAETPIGHESRRQSLSSPDFVWKYVIEVSGEQYLRCKFCNQRCTGGVNRLKHHLAGTH-HGRKPCSKVSEDARLECKEALANFKDQKTKRNELLQEIG------------MSPTSMH------------------ESALSKTIGTLGSGSGSVSGSGEPIPRGPMDKFTTSQPRQSTLNSK-WKQEERKEVCRKIGRFIYSKGLPFNTVNDPYWFPMIDAVANFGPGFKPPSMHELRTWILKEEVNDLSIIMEDHKKAW

SNPs (tot: 55)

Position	A %	C %	G %	T %	Probability
273	25		75		0.996473
296		20		80	0.995493
312	14	85			0.993533
314		14	85		0.993533
319		14	85		0.993533
331		14		85	0.993533
340		85	14		0.993533
341	14		85		0.993533
342		57		42	1.0
343	71			28	1.0
347	12	87			0.992554
348		25		75	1.0
350			12	87	0.992554
351			12	87	0.992554
352	12		87		0.992554
364	12		87		0.992554
373	12		87		0.992554
381		25	75		1.0
382		12	87		0.992554
383	75		25		1.0
390		25	75		1.0
395		75		25	1.0
396	25		75		1.0
397	75		25		1.0
410	87			12	0.992554
411	87			12	0.992554
416			50	50	1.0
417		12		87	0.992554
420		12	87		0.992554
439		50		50	1.0
447		37	62		1.0
460		50	50		1.0
462			87	12	0.992554
472		87		12	0.992554
475		14		85	0.993533
481			85	14	0.993533
488		14		85	0.993533
503		50		50	1.0
505	14		85		0.993533
506	50	50			1.0
515	50	50			1.0
529		50		50	1.0
530		33		66	1.0
539	50		50		1.0
550	71		28		1.0
552		71		28	1.0
559		50	50		1.0
564		28		71	1.0
565	33		66		1.0
570			50	33	1.0
571	85			14	0.993533
573		85		14	0.993533
621		20		80	0.995493
636		20		80	0.995493
637		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain