SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene35593

Length: 1072 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene35593 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	mitochondrial transcription termination factor family protein / mTERF family protein [Arabidopsis thaliana] gb\|AAC17042.1\| Contains similarity to myb protein homolog gb\|Z13997 from Petunia hybrida [Arabidopsis thaliana]	-	-	7.0e-14	25%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	protein	-	-	0.0	49%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Mitochodrial transcription termination factor-related	IPR003690	-	0.0	49%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9U0

Fln msg: Distance to subject end: 51 aas, your sequence is shorter than subject: 334 - 376

Fln protein: MAAKLSVRTVSGPIAEPLKQIHAMPAFIILFSSRLVQSPAKLLTAFYSTLNVPISPPPSFESTPVASFPQRAS*PWQANNFCRRKPYYLAQKSYDNSRQTLHFLRDKGFDEISVRKLFSRCPMLLRSSFEGIVKPKVEFLERIGLTGRKLLQFLKRRPHFLTYNVSRTLEPKVSFLQSVLDPYLVAVVSTPESDKIAGTNPDFHKIDEKVISSHSLTTSVIFNNPWVLSSSEKILVELVKDVERLGIEKGSKAFAPAFLQLSKLNRDTVKVKLGNLRELGFTEEEVGILVKRSPQLLGSSKDKLRQNLKFLVEEWKLPRNVILGFPVALRYSIE

Protein Length: 335

Fln nts: CGTCGTGACCTTGGCTGTCATGGGGGCACTTTGGTTGAGGAACGTTTGTAAGGGTTTGGTGTGTCGATA_-_ATGGCCGCAAAGCTATCAGTTCGAACAGTCTCTGGCCCTATAGCTGAACCTTTGAAGCAAATCCATGCCATGCCTGCCTTCATCATTCTCTTCTCCTCACGCCTCGTTCAAAGTCCAGCAAAATTATTAACAGCATTTTATTCGACTCTCAATGTACCCATTTCACCGCCTCCCTCCTTTGAAAGCACCCCAGTAGCGAGCTTCCCTCAACGAGCGTCGTGACCTTGGCAGGCAAACAACTTTTGCAGGAGAAAACCGTATTACCTTGCACAAAAATCGTACGATAATTCTCGACAAACCCTACATTTCCTGAGAGACAAGGGTTTTGATGAAATCAGTGTTCGTAAACTCTTTTCCAGGTGCCCCATGTTGCTAAGGTCCAGTTTCGAGGGCATTGTCAAGCCCAAGGTTGAATTCCTGGAGAGGATCGGCCTCACTGGTCGGAAATTGCTCCAATTCCTCAAAAGAAGACCACATTTTTTAACTTATAATGTTAGCCGTACGCTCGAACCGAAGGTTTCTTTTCTGCAGTCCGTGCTTGATCCCTATCTTGTAGCCGTGGTTTCGACCCCAGAATCTGATAAAATTGCCGGGACGAACCCAGATTTTCATAAAATTGACGAAAAAGTCATTTCCAGCCACAGCCTAACCACGTCTGTCATATTCAACAACCCTTGGGTTTTATCATCGTCTGAAAAAATATTGGTGGAACTTGTTAAAGATGTCGAACGATTGGGCATTGAGAAGGGGTCTAAGGCGTTTGCTCCCGCTTTTCTTCAGTTGAGTAAGCTGAACAGGGACACTGTTAAGGTGAAGTTGGGAAATTTGAGAGAATTAGGGTTTACAGAGGAGGAAGTTGGGATTCTCGTTAAGAGATCGCCTCAGCTTCTGGGGTCGTCCAAGGATAAACTCCGGCAGAATCTCAAGTTTCTTGTTGAGGAATGGAAGCTTCCTCGGAATGTTATTTTGGGTTTTCCGGTAGCTCTGCGTTATAGCATCGAGA

Fln Alignment:

sp_v1.1_unigene35593___IMAAKLSVRTVSGPIAEPLKQIHAMPAFIILFSSRLVQSPAKLLTAFYSTLNVPISPPPSFESTPVASF--PQRAS*PWQANNFCRRKPYYLAQKSYDNSRQTLHFLRDKGFDEISVRKLFSRCPMLLRSSFEGIVKPKVEFLERIGLTGRKLLQFLKRRPHFLTYNVSRTLEPKVSFLQSVLDPYLVAVVSTPESDKIAGTNPDFHKIDEKVISSHSLTTSVIFNNPWVLS-SSEKILVELVKDVERLGIEKGSKAFAPAFLQLSKLNRDTVKVKLGNLRELGFTEEEVGILVKRSPQLLGSSKDKLRQNLKFLVEEWKLPRNVILGFPVALRYSIE
D5A9U0_______________MMAATLSFRSVFTLIVKPPKHI---PAFNILSFSHPIQCPTKLFSEFYSTPRTPISPPPSFESTPLASFLLDECGFSPDEANSICRKKRDLPGHNFYDNLRQTLLFLKGKGLNDIGVRKLFSEYPTILRSSFRGTVKPKVEFLEKIGLTGQKLRKALNRNPLFLKLSVSRTLEPRVCFLQSVLDPDPTAVVSNSESDKIAS----------KVVSNHSLTTSVISKNPRILSLSTAKILAGLVKDVEGMGIEKGSKAFARAYLRLSMLNRDTVKLKLKNLRELGFTEEEVGILVKRFPQLLGSSEDKLRQNLKFLVEEWKLPRNFILSLPAVLCYSIE

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
771	50			50	1.0
772			50	50	1.0
775	50	50			1.0
777	50			50	1.0
778		50	50		1.0
789	50			50	1.0
790	50	50			1.0
793		50	50		1.0
796	50		50		1.0
942	80		20		0.995493
961	80		20		0.995495
978	40	60			1.0
995		16		83	0.994512
1058		60		40	1.0
1059		60	40		1.0
1060	40	60			1.0
1061	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain