SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene35583

Length: 964 nt

Origin of reads: Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene35583

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine carboxypeptidase-like enzyme n=2 Tax=Selaginella moellendorffii RepID=D8R643_SELML	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	serine carboxypeptidase-like enzyme	-	-	68%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AA71

Fln msg: your sequence is shorter than subject: 282 - 460

Fln protein: VVTLAVTHPSLSLYMLNQLDNNGVLPLRLDGLAIGDGLVHPVVQVQSHASVAYAVGLIDAQEKLHLEALQQEAANLTRQQKWHDARIARSRVLNSLENVTGLATLYDMRRTVPYYTSENGTDYLSLFLNQPAVKGALKVDGHLKWEDCSRAVGERMGDDVMKSSKWMVEALVRRRPVLLYQGQFDLQDGVVSTEGWISILDWEGLDDFLASKRSVWKVSNKLAGYMRSHSNLTHVVVAGSGHLVPADQSLHSQIMIESWVSRGSPSIGSVVDPFGMNARTS*

Protein Length: 283

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCCTTCCCTGAGCTTGTACATGCTCAACCAGCTGGACAATAATGGGGTGTTGCCATTGCGACTGGATGGACTGGCCATCGGCGATGGATTGGTCCACCCTGTCGTGCAGGTGCAATCTCACGCCTCTGTTGCATACGCCGTGGGGCTCATCGATGCTCAAGAAAAGCTGCACCTCGAAGCTCTGCAGCAGGAGGCAGCGAACCTCACCCGCCAGCAGAAATGGCATGATGCCCGCATTGCCAGAAGTCGTGTCCTGAATAGCCTGGAGAACGTTACAGGCCTGGCCACTCTGTACGACATGAGGAGGACAGTTCCGTATTACACCTCCGAGAATGGAACCGATTACCTCTCCCTGTTCCTCAATCAGCCTGCTGTCAAAGGAGCCCTGAAGGTGGATGGCCATCTGAAATGGGAGGACTGCAGCCGGGCGGTGGGCGAGAGAATGGGCGACGACGTGATGAAGAGCAGTAAGTGGATGGTGGAAGCCCTGGTACGGCGGAGACCAGTCCTGTTGTATCAGGGCCAATTCGACCTCCAGGATGGCGTTGTCTCCACCGAAGGGTGGATTTCTATTCTGGATTGGGAGGGATTGGACGACTTTCTGGCTTCCAAAAGAAGTGTTTGGAAAGTGTCCAACAAGCTGGCTGGGTACATGCGCTCCCACTCGAATCTCACCCATGTCGTTGTGGCAGGCTCAGGCCATCTTGTTCCGGCCGATCAGAGTCTTCATTCACAGATTATGATTGAATCCTGGGTCAGCAGAGGATCGCCCTCCATAGGATCAGTTGTAGACCCTTTTGGGATGAATGCAAGGACATCGTAA___AAGAAACAGGGGGACAtCGtAgaAgAAaCCAGGTGAGAAATTGACCTTGGCTGATTCAATACAATGGGTTGTAGAAATGCATATCAAATTGTCAAGGTGTATTTTCTAATAATATAT

Fln Alignment:

sp_v1.1_unigene35583___PSLSLYMLNQLDNNGVLPLRLDGLAIGDGLVHPVVQVQSHASVAYAVGLIDAQEKLHLEALQQEAANLTRQQKWHDARIARSRVLNSLENVTGLATLYDMRRTVPYYTSENGTDYLSLFLNQPAVKGALKVDGHLKWEDCSRAVGERMGDDVMKSSKWMVEALVRRRPVLLYQGQFDLQDGVVSTEGWISILDWEGLDDFLASKRSVWKVSNKLAGYMRSHSNLTHVVVAGSGHLVPADQSLHSQIMIESWVSRGSPSIGSVVDPFGMNARTS
D5AA71_______________PSLGLYMLNQLDNNRVLPLRLDGLAIGNGLTHPVVQVQSHASVAYAVGLIDSQEKLHLEALQQEAANLTRQQKWKAAHIARNRVIERLENVTGLATLYDMRRTLPYYTSENGTDYLSLFINKPAVKEALKADGHTKWEDCSQAVGERMGDDVMKSSKWMVEALVRRRPVLLYQGQFDLQDGVFSSESWISILDWEGLDNFLASERRIWEVSNVLAGYVRSHSNLTHVVVVGSGHLVPADQNLHSQIMIETWVSRGLPPTASDVEPVGMNAEIS

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
409	25	75			0.996473
461	25		75		0.996473
716	75			25	0.996473
775		75		25	0.996473
777		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain