SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene35536

Length: 1261 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene35536

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	50S ribosomal protein L1 n=1 Tax=Zea mays RepID=B6TB66_MAIZE	-	-	54%
FL-Next	sp=50S ribosomal protein L1, chloroplastic; Porphyra yezoensis. Plastid; Chloroplast.	-	-	49%
Blast2go	50s ribosomal protein l1	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular	GO:0005622	Cellular Component	0.0	72%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein L1	IPR002143	-	72%
Blast2go	Ribosomal protein L1, bacterial-type	IPR005878	-	72%
Blast2go	Ribosomal protein L1, 2-layer alpha/beta-sandwich	IPR016094	-	72%
Blast2go	Ribosomal protein L1, 3-layer alpha/beta-sandwich	IPR016095	-	72%
Blast2go	Ribosomal protein L1, conserved site	IPR023673	-	72%
Blast2go	Ribosomal protein L1, superfamily	IPR023674	-	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q1XDE9

Fln msg: your sequence is longer than subject: 267 - 229

Fln protein: MEREARRLQAQMLSREEEINIPFPRLVPPAKKEPKVEYELKDAIRHVKANIKCKFDETVEAHVLLGVNAKRGDQMVRGGAPLPHGIGKAIRVAVFADGDAANEAKAAGADVVGGDELVNEIKEGGLKGNFDKCIATPTFMPRLGKIGKVLGPRGLMPNPKAGTVTNDVAAAVREAKKGRVDFKMDKTAIVHAGLGKASFKEEALFDNIAAFLQALIAAKPVGLKNTSRYAGYIKTFTLTSTMGPGFRVSIQSLTQAADQYMKLRVH*

Protein Length: 268

Fln nts: GAGAGCGGAAGAGAAGGTTTGGGGTTGAAACCGCAC_-_ATGGAAAGAGAGGCACGAAGGCTTCAAGCCCAGATGTTAAGTCGCGAGGAGGAGATTAATATACCATTCCCACGGCTAGTACCACCTGCCAAGAAGGAGCCCAAAGTAGAGTATGAATTGAAGGATGCCATTCGGCATGTCAAGGCTAATATCAAATGTAAGTTTGATGAAACTGTGGAAGCACATGTTCTTTTGGGTGTAAATGCAAAGCGAGGGGATCAGATGGTTCGTGGTGGAGCTCCTCTTCCACATGGAATTGGCAAGGCTATTAGAGTAGCAGTGTTTGCAGATGGAGATGCTGCAAATGAAGCTAAGGCTGCTGGAGCTGACGTTGTTGGAGGAGATGAACTAGTTAATGAAATTAAGGAAGGTGGTTTAAAGGGCAATTTTGATAAGTGCATTGCAACTCCGACATTTATGCCACGTCTTGGAAAGATAGGAAAGGTTTTGGGACCTCGAGGTTTGATGCCAAATCCCAAAGCTGGCACAGTGACAAATGATGTTGCAGCAGCTGTCCGGGAGGCAAAGAAAGGTCGAGTGGACTTTAAGATGGACAAGACTGCAATAGTGCATGCAGGACTTGGAAAGGCTAGCTTTAAAGAAGAAGCATTGTTCGACAATATTGCAGCATTCTTGCAAGCCCTTATTGCTGCGAAGCCAGTTGGTTTGAAAAACACGTCCAGATATGCAGGATATATTAAAACCTTTACATTAACTAGCACTATGGGGCCTGGTTTTCGAGTTTCAATACAGTCATTAACGCAGGCTGCAGACCAATATATGAAATTAAGAGTGCATTAG___TCTAGGTCAAAATTGTCAACTGAAAGTTTTAAAAAGTATTTACAGCATTGTACATCATCAAGATCATATATTCTTTACCACAGTCCCCATTTATGATCTCGCTACTTCATTTTGTGAGTGGCTTTCCAAGTCACAAATTTCTGGAGCTCTTACATTATTGTTATTGTTAACCTTGAATCAGGGGAATGCTCTGTTGATTGGAACCTGATTTATTCTTTTTGGGTAGAACCGTGCATCTAACCATTCATGAGAGAGGTGACAACTTTTAGCAATCGAAGGTGGGCACTTAATAAGTGCAGAGCTTGTCTGGTTATGAGTTTTACCACGAATAAGCGAGATTGAATATGTGCTCTTTTAATCTGTAGTATATCATGTCTAAATGATGAACACAGTACACAACCATTCTTGACACTAGAATTATGTT

Fln Alignment:

sp_v1.1_unigene35536___AKKEPKVEYELKDAIRHVKANIKCKFDETVEAHVLLGVNAKRGDQMVRGGAPLPHGIGKAIRVAVFXXXXXXXXXXXXXXXXXXXXELVNEIKEGGLKGNFDKCIATPTFMPRLGKIGKVLGPRGLMPNPKAGTVTNDVAAAVREAKKGRVDFKMDKTAIVHAGLGKASFKEEALFDNIAAFLQALIAAKPVGLKNTSRYAGYIKTFTLTSTMGPGFRVSIQSL
Q1XDE9_______________SKVEPKL-YTINEAVSILKATSNAKFKETAEAHIALGLNPKYADQQLRATVILPKGTGKLIKVAVIAKGEKLTEAISAGADVSGSEELIDEILKGRL--DFDKLIATPDVMPLIAKLGRVLGPRGLMPSPKAGTVTLDVAKAVNEFKGGKVEYRVDRTGIIHVPFGKSSFSQEDLVLNLQTIKESIDRNKPSGAKGK-----YWKTFFLSSTMGPSIQIDITSL

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
689			10	90	0.90298
699		90		10	0.90298
716		57		42	1.0
792		10		90	0.90298
807	85		14		0.999981
912	81			18	1.0
919	81		18		1.0
966		9	90		0.999872
1004	85			14	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain