SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene35512

Length: 1104 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene35512

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATIM; ATIM (TIMELESS); K03155 timeless	-	-	57%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	60%
Blast2go	timeless family protein	-	-	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Timeless protein	IPR006906	-	0.0	67%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9N9A6

Fln msg: Separated hits, possible frame ERROR between 543 and 552, Distance to subject end: 977 aas, your sequence is shorter than subject: 365 - 1341

Fln protein: MEIEGLSVVCAGLGCASQDADGKRNEYIKSENCLENLKDLQRFLRRDHPQTRDVFKQLGKWNTVSQDLIPIIEQYRNETELVMNTVKVIVFLTMPIDPSSDDISLQMEYLWSFKASFSCNDAIAVIVSLLEEPLERLECESFTEDDWKVIQLVLTLFRNLLAIRDPSPQQMTGRSNSxxxxLRDGFLEHLFHENVMDLLLALTQHVAGSHGFLKQDNLLLLEIFHYIFSGQQPELVATVQQKILKSDTKSHQLSGTLRSMMEEEEEQRRLLRLRDLPRHSQFCGTFVRLAPDGSKRIVKRNPFITPAESILKTCQIKRGPIKRIACDTSSPVSSKNSVLGLLQHFADQFLDSGYNVLMQSVREDI

Protein Length: 366

Fln nts: ATTTTGGAG_-_ATGGAGATAGAAGGGTTATCGGTGGTGTGCGCAGGGCTTGGCTGCGCGTCTCAAGATGCTGATGGCAAGCGAAATGAGTATATAAAGAGTGAAAACTGTTTAGAGAACTTGAAGGACTTGCAGCGATTTCTTCGCAGAGACCACCCACAAACCAGAGATGTGTTTAAACAGCTTGGCAAGTGGAATACAGTGTCTCAGGACTTGATACCCATCATTGAACAATATCGAAACGAGACCGAACTTGTAATGAACACTGTGAAGGTTATAGTTTTCCTCACTATGCCCATTGATCCTTCCTCTGATGACATCTCACTACAAATGGAGTACCTTTGGAGCTTCAAGGCTTCGTTTTCCTGCAATGATGCAATTGCTGTCATTGTTTCTCTTTTAGAAGAACCACTGGAACGCTTAGAATGTGAATCTTTTACAGAGGATGATTGGAAGGTGATCCAATTAGTACTCACCCTATTTCGTAACCTATTAGCTATTCGGGATCCTTCACCACAGCAGATGACAGGCAGATCTAATTCTCAxxxxxxxxxTTTAAGGGATGGTTTCTTGGAGCATTTGTTTCATGAAAATGTGATGGACCTTCTTTTAGCACTGACTCAACATGTCGCTGGCTCGCATGGTTTCCTTAAGCAAGATAATTTACTTTTACTGGAGATTTTCCATTATATTTTTTCGGGTCAGCAGCCTGAGCTAGTAGCTACCGTGCAACAGAAAATTCTTAAGAGTGATACTAAATCACATCAATTATCAGGAACTCTACGGTCAATGATGGAAGAGGAAGAAGAGCAGAGAAGACTTCTGCGCCTAAGAGATTTGCCCCGTCATTCACAATTTTGTGGAACATTTGTTAGGCTTGCCCCGGATGGTTCAAAGAGGATTGTGAAGAGGAACCCATTTATCACTCCTGCTGAGAGTATACTTAAAACATGTCAGATCAAGCGAGGCCCTATAAAGCGGATTGCATGTGATACTAGTAGTCCAGTGTCATCCAAAAACAGCGTTCTGGGACTCCTCCAGCATTTTGCAGATCAGTTTCTGGATTCTGGATATAATGTGTTGATGCAGTCCGTGAGGGAGGACATCA

Fln Alignment:

sp_v1.1_unigene35512___MEIEGLSVVCAGLGCASQDADGKRNEYIKSENCLENLKDLQRFLRRDHPQTRDVFKQLGKWNTVSQDLIPIIEQYRNETELVMNTVKVIVFLTMPIDPSSDDISLQMEYLWSFKASFSCNDAIAVIVSXXXXXXXXXXXXSFTEDDWKVIQLVLTLFRNLLAIRDPSPQQMTGRSNSQxxxLRDGFLEHLFHENVMDLLLALTQHVAGSHGFLKQDNLLLLEIFHYIFSGQQPELVATVQQKILKSDTKSHQLSGTXXXXXXXXXXXXXXXXXXXXPRHSQFCGTFVRLAPDGSKRIVKRNPFITPAESILKTCQIKRGPIKRIACDTSSPVSSKNSVLGLLQHFADQFLDSGYNVLMQSVREDI
B9N9A6_______________MEMQGLAGICVGLGTPEEDDNGNRIGYTKGANCLDNLKDLLRFLRRDDPQTRGVFKQVCKWNTVGKDLMPIIQYCQDDRNLVLNAVKVLVFLTMPIEPSSSDIWLQVEYLWGLKAAITLSGTIPVVVSLLEGPLENLDREAFTEDDWKLVQLVLTLFRNVLAVHDFSMLQKVGESASQxxxLRDRFLELLFHENVMDIILVITQNIKGSCSYFLHDNLLLLEIFHYIFMGQEPGLIVNAGLKDFKVCGSSTSLDILKSIMKEEEQKKMKLSRQRNVVRHSQFSGTFTWLTMDGSKAVCLGNP-SSASQILLKPYKAQKGPSKKILWDHGRLPSMKDNILELLHDFLNQFLSGGYNDLMESIREDI

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
766	80		20		0.995493
782	80		20		0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain