SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene35509

Length: 977 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene35509 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Multidrug resistance protein ABC transporter family n=1 Tax=Populus trichocarpa RepID=B9I191_POPTR	-	-	77%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	30%
Blast2go	multidrug resistance-associated protein	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xenobiotic-transporting ATPase.	EC:3.6.3.44	-	0.0	90%

Source	GOs	Term	Type	Identity
Blast2go	xenobiotic-transporting ATPase activity	GO:0008559	Molecular Function	90%
Blast2go	protein binding	GO:0005515	Molecular Function	90%
Blast2go	plant-type vacuole	GO:0000325	Cellular Component	90%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Blast2go	ABC transporter, transmembrane domain	IPR001140	-	90%
Blast2go	ABC transporter-like	IPR003439	-	90%
Blast2go	ABC transporter, transmembrane domain, type 1	IPR011527	-	90%
Blast2go	ABC transporter, conserved site	IPR017871	-	90%
Blast2go	ABC transporter, integral membrane type 1	IPR017940	-	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: Distance to subject end: 742 aas, your sequence is shorter than subject: 325 - 1316

Fln protein: MQKLSKEGLQRTDKRIGLMNEILAAMDTVKCYAWENSFRSKVQTIRNDELSWFRKAQLLGSCNSFILNSIPIVVTVLAFGLYTLLGGQLTAAKAFSSLSLFAVLRFPLFMFPNLITQVVNANVSLKRLEDLFLAEERILQPNPPIQAGLPAISIKNGTFSWDKKAEKATLSNIHLDISVGSLVAVVGSTGEGKTSLISAILGEIPAVSETEVVVRGSVAYVPQVSWIFNATVRDNILFGSPYDPLRYEKAIHVSALEHDLQSLPGGDLTEIGERGVNISGGQKQRVSIARAVYANTDVYIFDDPLSALDAHVGRQVFEKCLKDEL

Protein Length: 326

Fln nts: GATGCAAAAACTATCAAAGGAAGGATTGCAGCGTACAGACAAGAGGATTGGTCTCATGAATGAAATTCTGGCTGCAATGGACACGGTCAAATGCTATGCATGGGAAAATAGTTTTCGGTCAAAGGTCCAGACTATTAGGAATGATGAGCTCAGCTGGTTTAGGAAGGCACAATTATTGGGATCGTGCAACAGCTTCATTCTGAATAGTATTCCAATCGTTGTTACTGTGCTTGCTTTTGGGCTGTATACTTTGCTTGGTGGTCAATTGACAGCTGCAAAAGCCTTTTCATCTCTTTCCTTGTTTGCAGTATTGAGATTTCCACTCTTTATGTTCCCAAACTTGATAACTCAGGTTGTTAATGCTAATGTGTCATTGAAAAGACTAGAGGATCTGTTTTTGGCAGAAGAAAGAATATTGCAACCAAATCCACCCATTCAGGCAGGCCTGCCTGCTATATCAATTAAAAATGGAACTTTTTCTTGGGACAAAAAGGCAGAGAAAGCTACACTATCCAACATTCATCTTGATATCTCTGTTGGGAGTCTTGTTGCTGTTGTTGGTAGTACAGGCGAGGGTAAAACTTCTTTGATCTCAGCAATACTTGGAGAGATACCTGCGGTTTCAGAGACGGAGGTAGTTGTCAGGGGAAGTGTTGCATATGTTCCACAAGTTTCATGGATCTTCAATGCAACAGTCCGTGACAACATCTTGTTTGGGTCTCCTTATGATCCGTTACGTTATGAAAAAGCAATCCATGTCAGTGCATTGGAACATGATCTTCAGTCATTGCCAGGTGGTGATCTTACAGAAATTGGTGAAAGAGGAGTGAACATTAGTGGTGGCCAAAAGCAAAGAGTTTCTATTGCCAGGGCTGTATATGCTAACACAGATGTTTATATATTTGATGATCCTCTAAGTGCACTCGATGCCCATGTTGGCCGTCAGGTATTTGAGAAATGCCTCAAGGATGAACTCA

Fln Alignment:

sp_v1.1_unigene35509___ISIKNGTFSWDKKAEKATLSNIHLDISVGSLVAVVGSTGEGKTSLISAI-------LGEIPA----VSETEVV-VRGSVAYVPQVSWIFNATVRDNILFGSPYDPLRYEKAI-HVSALEHDLQSLPGGDLTEIGERGVNISGGQKQRVSIARAVYANTDVYIFDDPLSALDAHVGRQVFE
E6Y0T0_______________IELKDVRFTYPARPDVQVFSGFSLEIPSGTTAALVGESGSGKSTVISLVERFYDPQAGEVLIDGINIKKFQLKWIRQKIGLVSQEPVLFGTTIKENLLYGKDGATLEEIKAAAELANAAKFINKLPQGFDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDTESERVVQE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain