SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene35464

Length: 1109 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene35464

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GTP-binding protein enga, putative; K03977 GTP-binding protein	-	-	57%
FL-Next	sp=Probable tRNA modification GTPase mnmE; Cyanidium caldarium. Plastid; Chloroplast.	-	-	27%
Blast2go	gtp-binding protein	-	-	71%

Source	InterPros	Term	Type	Identity
Blast2go	GTP-binding domain, HSR1-related	IPR002917	-	71%
Blast2go	Small GTP-binding protein domain	IPR005225	-	71%
Blast2go	GTP binding domain	IPR006073	-	71%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q9TLX6

Fln msg: STOP codon was not found. Distance to subject end: 53 aas, your sequence is shorter than subject: 369 - 465

Fln protein: DLSMAGRDGQEFQSASTKAEECADTVLDSQLQERPLCDGNRDKDGSVDLESPENAEHDFDEVDVEMLPTIVLIGRPNVGKSALFNRLIRRREALVHNTPDSHMTRDIREGVAKLGDLRFKVVDSAGLEREASSGSVLARTARLTANVIERSHMAIFLFDARTGLHPLDLEVGKWLRKHASNLHVVLVMNKAEGIYDDSSGTLTALLGEAHTLGFGNATPISAETGEGMAELYEALRPPLEDTMERIYENACAQEENTDKDANDKLPLQLAIVGRPNVGKSTLLNSLLLEERVLTGPEPGLTRDSVRVEFKFEGRKIYLVDTAGWLQRSKIEGGPAALSAMHARRNIMRAQIVAMVLDGEEISKARSSMQ

Protein Length: 370

Fln nts: GATCTGTCTATGGCAGGCAGAGACGGACAAGAATTTCAAAGTGCTTCAACGAAGGCCGAGGAGTGTGCAGACACAGTTCTTGACAGCCAATTACAGGAGAGACCGCTCTGTGATGGAAATAGAGATAAAGATGGTTCAGTGGATCTTGAGTCGCCTGAAAATGCAGAGCACGATTTTGACGAAGTTGATGTTGAAATGCTGCCGACCATAGTTCTCATTGGAAGGCCAAATGTGGGGAAGTCAGCGTTGTTTAATAGGTTAATAAGGAGGAGAGAGGCCCTTGTGCACAACACACCTGATAGTCATATGACCCGTGATATTCGTGAAGGTGTTGCTAAATTGGGGGACTTACGATTTAAAGTAGTAGACTCGGCAGGGTTAGAGAGGGAAGCATCTTCAGGAAGTGTCCTTGCAAGAACTGCAAGGCTGACGGCAAATGTTATTGAGAGGTCTCACATGGCAATATTTCTCTTCGATGCCAGAACTGGATTACATCCATTAGATCTGGAGGTTGGAAAATGGCTACGGAAACATGCATCAAATCTTCATGTTGTCTTAGTGATGAATAAAGCTGAAGGTATTTATGATGATTCGAGCGGTACTCTGACGGCATTGTTGGGAGAAGCTCATACTTTAGGTTTTGGAAATGCTACTCCAATATCTGCAGAAACTGGAGAAGGCATGGCTGAACTTTATGAGGCTCTTCGTCCTCCCCTTGAGGATACCATGGAACGCATCTATGAAAATGCATGTGCACAAGAGGAGAACACAGATAAGGATGCCAATGACAAGTTGCCTTTACAGTTGGCAATTGTGGGACGCCCGAATGTTGGCAAGTCAACATTATTGAATTCATTGTTGTTGGAAGAACGTGTGCTGACTGGACCTGAGCCAGGTCTAACACGAGATTCTGTTCGAGTGGAGTTTAAGTTTGAGGGCCGGAAAATCTATCTGGTTGACACTGCTGGTTGGTTGCAAAGGTCAAAAATAGAAGGAGGACCAGCAGCATTGAGTGCTATGCATGCACGGCGTAATATCATGAGGGCCCAAATCGTTGCTATGGTGCTGGATGGAGAAGAGATATCAAAAGCAAGAAGCAGCATGCAGCA

Fln Alignment:

sp_v1.1_unigene35464___IVLIGRPNVGKSALFNRLIRRREALVHNTPDSHMTRDIREGVAKLGDLRFKVVDSAGLEREASSGSVLARTARLTANVIERSHMAIFLFDARTGLHPLDLEVGKWLRKHASNLHVVLVMNKAE
Q9TLX6_______________VCIIGKPNVGKSSLLNAIAKRECSIVTNFPGT--TRDIVSFETMLGNTLVRLYDTAGIRQSVDEIEKIGISK--TELFVDECQIVFFVLDAIQGLSSEDSVI--FNKLNLMNKNFVILINKID

SNPs (tot: 4)

Position	A %	G %	T %	Probability
767	14	85		0.993533
768	57	28	14	1.0
770	85	14		0.993533
771	85	14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain