SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene35458

Length: 959 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene35458 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ARP1505; actin-related protein Arp6; K11662 actin-related protein 6	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	31%
Blast2go	actin-related protein 6	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	cell proliferation	GO:0008283	Biological Process	79%
Blast2go	chromatin remodeling	GO:0006338	Biological Process	79%
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	79%
Blast2go	protein binding	GO:0005515	Molecular Function	79%
Blast2go	chromatin remodeling complex	GO:0016585	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Actin-like	IPR004000	-	0.0	79%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ86

Fln msg: Distance to subject end: 115 aas, your sequence is shorter than subject: 267 - 377

Fln protein: MAGVCAPMVVLDNGGGYCKAGFAGHKNPLVVVPNCMGRPQSTKKWVIADQLQQCDDIAGITLRRPFDRGYLINPDLQKEIWDRIFKNLLKIRPSDSSGLLLVEPLFNLPSIQRATDELVFEDLGFQSLYVADSPSLVHLYEASRSPISLLARTQCSLVVDCGFSFTHAAPVYQNFTINYGVKRIDLGGKALTNYFKELVSYRAINMMDETYIMDDVKEKLCFVSLDVARDLEVARKPGNENLIRSTYVLPDGIKHKRGFVKDPEGAR

Protein Length: 268

Fln nts: ATGGGGATTGTTTCCTTTCTTATATTATCGTAACTTGGATTATAATGAGGAAAATAGTTGAAAGGTGTAAATAGTAATTCGGAGCGTTGGAGGTCTCAAAGATTTGAAATATTCAGCCAGAGGTAGTGAAGCCGGGAGGTGATAGCTGCAGCTAATC_-_ATGGCGGGAGTGTGTGCACCCATGGTAGTGTTGGACAACGGAGGAGGATACTGTAAAGCAGGGTTCGCGGGCCACAAAAATCCTCTGGTGGTCGTCCCCAATTGTATGGGGCGTCCCCAATCCACGAAGAAATGGGTGATAGCAGACCAGCTCCAGCAGTGCGATGACATAGCCGGCATTACCCTGCGCCGCCCATTCGACAGAGGTTACCTCATAAACCCCGACCTGCAGAAAGAGATTTGGGATCGAATATTTAAAAACCTTCTCAAAATTCGACCCTCAGACTCTTCGGGTTTGCTCTTGGTGGAGCCTCTCTTCAATCTGCCCTCCATTCAGAGGGCCACGGACGAGCTTGTCTTCGAAGATCTAGGGTTCCAGTCCCTTTACGTAGCAGATTCGCCCTCGTTGGTTCATTTATACGAGGCGAGCAGGTCGCCTATCAGCCTTTTAGCGCGCACACAATGCAGCCTCGTAGTGGATTGCGGCTTCTCCTTCACCCACGCGGCTCCCGTGTACCAGAACTTTACTATTAATTATGGGGTTAAAAGAATTGATCTCGGAGGAAAGGCGCTCACTAATTATTTCAAGGAGCTTGTTTCCTACCGGGCTATTAATATGATGGACGAGACTTACATCATGGACGATGTTAAGGAAAAGCTATGCTTCGTTTCACTCGATGTCGCCCGCGACCTTGAAGTGGCCAGGAAACCAGGAAATGAAAATCTTATTCGAAGTACGTATGTCCTTCCTGATGGTATCAAACATAAGCGGGGTTTTGTGAAAGATCCAGAAGGGGCCCGGA

Fln Alignment:

sp_v1.1_unigene35458___VVLDNGGGYCKAGFAGHKNPLVVVPNCMGRPQST--------KKWVIADQLQQCDDIAGITLRRPFDRGYLINPDLQKEIWDRIFKNLLKIRPSDSSGLLLVEPLFNLPSIQRATDELVFEDLGFQSLYVADSPSLVHLYEASRSPISLLARTQCSLVVDCGFSFTHAAPVYQNFTINYGVKRIDLGGKALTNYFKELVSYRAINMMD--ETYIMDDVKEKLCFVSLDVARDLEVARKPGNENLIRSTYVLPDG
B8LQ86_______________LVLDNGSGTVKAGFAGDDAPRAVFPSLVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI--LTLKYPVEHGIVNNWDDMEKIWHHTFNNELRVAPEDHP-VLLTEPPLNPKANRERTTQIMFEVFNTPAMYIA-IQAVLSLYASGRT---------TGIVLDSGDGVTHVVPIYEGYALPHAIYRVDLAGRDLTNALCKILTERGYSFTTTAEREIVRDIKEKLGYVAMDYEKEMELEKSSG---ALEKNYELPDG

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
65		66		33	0.997452
257			50	50	1.0
300	25	75			0.996473
330		50		50	1.0
392			75	25	0.996473
393	75		25		0.996473
395		75	25		0.996473
396		75		25	0.996473
397	75		25		0.996473
404		25	75		0.996473
406	25		75		0.996473
409	75		25		0.996473
413	25		75		0.996473
415			25	75	0.996473
497		33		66	0.997452
661		25		75	0.996473
771	20		80		0.995493
813		66	33		0.997452
857		25		75	0.996473
859	75	25			0.996473
860	75	25			0.996473
894			33	66	0.997459
896		33		66	0.997459
902		66	33		0.997457

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain