SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene35431

Length: 1065 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene35431

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ring zinc finger protein	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	32%
Blast2go	ring zinc finger protein	-	-	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	66%
Blast2go	protein autoubiquitination	GO:0051865	Biological Process	66%
Blast2go	kinase activity	GO:0016301	Molecular Function	66%
Blast2go	protein binding	GO:0005515	Molecular Function	66%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ankyrin repeat	IPR002110	-	0.0	66%
Blast2go	Ankyrin repeat-containing domain	IPR020683	-	0.0	66%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN39

Fln msg: STOP codon was not found. Distance to subject end: 14 aas,

Fln protein: MGLVVSCGNLGGELLSDAIRAGDIDLVKKLIEKDPGLLNKPLNAYQRLSSLHIAALYGRAHVMQVLLEAGAEPNVCGTKARTPLMVACKRGKATCVELLVRSGANVLAFEASNGRTCLHYAARGGHYECVERIIDATRTGPVAESWGFIRFVNVRDAIGTTPLHMAARAGKASICRLLLDNGAFVSATTSTFGFGPKHGSTTLHSAAKGGSVEVIHELLAWGADRTQKDLMGRTPYEVAVKYNNMVCAAILNPNVAEPMVWPSPWKFISNL

Protein Length: 272

Fln nts: ATGGGGGACTGAGGGGACAATAATGGCGTTTTAAACAATATTGAAATGCTGATTAGGCCCTAATTTAATAGAAAGAAGGCCACTTCCTTTCGTGATGCTCTCCAATTTTAGAGGGGTGAATAAATAAATACTTCGAGATTTGACACGAAAGGTTGCTGAGAACCCGGGTCCCATCGGCACCTGCAATGAGTTTCAGTGTCAACTTCTATATCTGTTAGTACTGTTCTGAGAAGGAACGGAGGGGATCTCTC_-_ATGGGGCTGGTGGTTAGCTGTGGGAATTTAGGAGGGGAGCTTTTGTCCGATGCGATCAGGGCGGGAGACATTGATTTGGTGAAAAAACTGATAGAAAAGGATCCAGGCTTACTCAACAAACCTCTCAACGCTTACCAGCGGCTCAGCTCCCTGCACATTGCTGCCCTATATGGCCGCGCTCATGTTATGCAAGTTCTGCTGGAGGCAGGGGCCGAGCCCAATGTGTGTGGCACCAAAGCAAGGACTCCATTGATGGTAGCTTGCAAGCGAGGGAAAGCAACATGCGTTGAACTTTTGGTTCGATCTGGAGCAAACGTGCTGGCATTTGAAGCATCTAATGGAAGAACTTGTCTGCATTACGCCGCGAGAGGAGGCCACTATGAATGCGTTGAAAGAATCATAGATGCTACACGGACAGGACCAGTTGCCGAGTCTTGGGGATTTATCCGCTTTGTTAATGTAAGAGATGCTATTGGAACAACCCCTCTTCATATGGCTGCCCGAGCAGGGAAGGCTAGTATCTGTCGTTTGCTGTTGGATAATGGGGCATTTGTCTCAGCAACCACTTCCACATTTGGTTTTGGGCCAAAGCATGGAAGCACAACTCTTCATAGCGCAGCTAAAGGAGGATCTGTAGAAGTAATCCACGAGTTGCTCGCATGGGGAGCTGACCGCACGCAGAAGGACCTTATGGGGCGTACTCCATACGAAGTAGCAGTGAAGTACAACAACATGGTATGTGCAGCCATTTTGAACCCCAATGTAGCAGAGCCCATGGTGTGGCCATCTCCCTGGAAATTCATTAGCAATTTAG

Fln Alignment:

sp_v1.1_unigene35431___LGGELLSDAIRAGDIDLVKKLIEKDPGLLN-KPLNAYQRLSSLHIAALYGRAHVMQVLLEAGAEPNVCGT-----KARTPLMVACKRGKATCVELLVRSGANVLAFEASNGRTCLHYAARGGHYECVERIIDATRTGPVAESWGFIRFVNVRDAIGTTPLHMAARAGKASICRLLLDNGAFVSATTSTFGFGPKHGSTTLHSAAKGGSVEVIHELLAWGADRTQKDLMGRT
A9NN39_______________INDEDLFRAAEAGDSGVFEKLSRNEVDLNRARSIRNEDARSVLHVAAAAGHHQVVRIL--AGLDPSVSGVNNGDEEGWTPLHSAVSSGHANVVEALLQAGADV-SVANNGGRTALHYAASKGRVKIAQDLISNGAN------------IRKKDKFGCTPLHRAASAGHPEICELLIEEGADVDATDKT-------GQTPLMNAVISNDKQIALLLVRHGADVDCEDNEGYT

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
543		33		66	0.997452
651	61		38		1.0
818	80		20		0.995493
1008	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain