SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene35422

Length: 623 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene35422

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cell division control protein, putative n=1 Tax=Ricinus communis RepID=B9S7K4_RICCO	-	-	87%
FL-Next	tr=R2R3-MYB transcription factor MYB3; Pinus taeda (Loblolly pine).	-	-	37%
Blast2go	myb transcription factor	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	96%
Blast2go	defense response signaling pathway, resistance gene-dependent	GO:0009870	Biological Process	96%
Blast2go	defense response signaling pathway, resistance gene-independent	GO:0010204	Biological Process	96%
Blast2go	defense response to fungus	GO:0050832	Biological Process	96%

Source	InterPros	Term	Type	Identity
Blast2go	SANT/Myb domain	IPR001005	-	96%
Blast2go	Homeodomain-like	IPR009057	-	96%
Blast2go	Homeodomain-related	IPR012287	-	96%
Blast2go	Myb, DNA-binding	IPR014778	-	96%
Blast2go	Myb transcription factor	IPR015495	-	96%
Blast2go	Myb domain, DNA-binding	IPR017930	-	96%

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
495	11		88		0.991528
505		75		25	1.0
558	20		80		0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain