SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene35341

Length: 905 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene35341 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Electron transport SCO1/SenC family protein n=2 Tax=Arabidopsis RepID=D7L7P7_ARALY	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	80%

Source	InterPros	Term	Type	Identity
Blast2go	Copper chaperone SCO1/SenC	IPR003782	-	80%
Blast2go	Thioredoxin fold	IPR012335	-	80%
Blast2go	Thioredoxin-like fold	IPR012336	-	80%
Blast2go	Synthesis of cytochrome c oxidase, Sco1/Sco2	IPR017276	-	80%
Blast2go	Thioredoxin-like	IPR017936	-	80%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NU72

Fln msg: your sequence is shorter than subject: 287 - 331

Fln protein: GSQRFLYSKSTIDMISSSLGYAKLSSSISWRNMATDTAKVEEPPKEQPVQGSTKDGDKGDESHGTTSKGRPVREGPVTWMSLVLLIITGVGLIIYFDREKKRRIEEIKNVPAQVKEGPSVGKAAIGGPFNLVNHEGKPVTDRDFTGKWTLIYFGFTHCPDICPDELQKMVAAIDKITEKAGIEVVPIFISVDPERDTVEQVREYVKEFHPNLVGLTGSQSDIRQVAREFRVYYMKTEEEEADYLVDHSIIMYLMDPDMEFVKFFGKNYDVDALTEGVINEVKSYKK*

Protein Length: 288

Fln nts: GGGTCCCAGCGTTTTCTCTATTCGAAATCTACAATAGACATGATCAGCTCATCATTAGGATATGCAAAACTTTCTTCCTCAATATCTTGGCGAAATATGGCCACAGATACTGCAAAAGTTGAAGAACCTCCAAAAGAACAACCAGTTCAAGGCTCCACAAAGGATGGAGATAAAGGAGATGAATCTCATGGGACCACTTCCAAAGGCAGGCCAGTACGAGAAGGACCTGTCACTTGGATGAGTTTGGTGCTCTTGATCATCACAGGGGTTGGATTGATTATCTACTTTGATCGCGAGAAGAAGCGTCGCATTGAAGAAATAAAGAATGTACCTGCACAGGTGAAAGAGGGGCCCTCGGTAGGCAAAGCTGCTATTGGTGGTCCGTTTAATCTTGTGAATCATGAAGGAAAACCTGTAACAGACCGTGATTTTACTGGAAAGTGGACATTGATTTATTTTGGCTTTACTCACTGCCCTGATATTTGCCCCGATGAACTTCAGAAAATGGTCGCTGCAATTGACAAAATAACGGAAAAAGCGGGCATTGAGGTTGTACCTATCTTTATATCAGTGGATCCAGAGAGGGATACTGTTGAGCAAGTCCGTGAATATGTCAAAGAATTCCATCCAAATCTGGTGGGTTTAACAGGAAGTCAGAGTGATATCAGACAGGTTGCCCGAGAATTCCGAGTTTACTACATGAAGACAGAAGAGGAAGAAGCTGATTACCTTGTAGACCATTCTATTATCATGTATTTAATGGACCCAGACATGGAATTTGTGAAATTCTTTGGGAAAAATTATGATGTCGATGCTTTGACGGAGGGAGTAATTAATGAAGTCAAATCCTATAAAAAATAA___TTGTTTTACCGGATTCGCAGTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

sp_v1.1_unigene35341___GSQRFLYSKSTIDMXXXXXXXXXXXXXXSWRNMATDTAKVEEPPKEQPVQGSTKDGDKGDESHGTTSKGRPVREGPVTWMSXXXXXXXXXXXXIYFDREKKRRIEEIKNVPAQVKEGPSVGKAAIGGPFNLVNHEGKPVTDRDFTGKWTLIYFGFTHCPDICPDELQKMVAAIDKITEKAGIEVVPIFISVDPERDTVEQVREYVKEFHPNLVGLTGSQSDIRQVAREFRVYYMKTEEEEADYLVDHSIIMYLMDPDMEFVKFFGKNYDVDALTEGVINEVKSYKK
A9NU72_______________GSQGFLYSKSTVHRIASSFGYAKLSSSVFWRNMATDTAKVEEPPKEQPVQASTKDGDKGNESGGTTSKGRPVREGPVTWMSLVLLIITGVGLIIYFDREKKRRIEEIKNLPAQVKEGPSVGKAAIGGPFNLVNHEGKPVTDRDFTGKWSLIYFGFTHCPDICPDELQKMVAAIDKIKEKAGFEVVPVFISVDPERDTVEQVHEYVKEFHPNLVGLTGSQSDIRQVAREFRVYYMKTEEEEADYLVDHSIIMYLMDPDMEFVKFFGKNYDVDALTEGVINEVKSYKK

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
678		20		80	0.995493
700			20	80	0.995493
752		25		75	0.996473
835		50		50	1.0
877		75	25		0.996473
879		25		75	0.996473
880	25		75		0.996473
881			25	75	0.996473
883		25		75	0.996473
885	25			75	0.996473
886		25	25	50	0.995533
890		25	75		0.996473
892		25		75	0.996473
893			25	75	0.996473
894	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain