SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene35308

Length: 1912 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene35308

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L10, mitochondrial, putative	-	-	71%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	80%
Blast2go	protein	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular	GO:0005622	Cellular Component	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosomal protein L15, bacterial-type	IPR005749	-	0.0	80%
Blast2go	Ribosomal protein L18e/L15P	IPR021131	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9N3V7

Fln msg: your sequence is longer than subject: 283 - 224

Fln protein: MMMMIRRQFLKRISNFAVAAASHAFSYPPAPNRVCNGPFTTTAATFTSGSALCSGAALNAVGGRRLLLLNDLRDNKGSRKKKTRKGRGIGSGKGKTAGRGHKGQKARGGHKLGFEGGQTPLRRLLPRRGFKNPFSLSFQPITLGKLARYINAGRIDSSELITMKTLKDVGAIGKQIEDGVKLLGGSGAKDIQWPIHVEVSRVTTPAKEAIEAAGGSVRRVHYNRLGLRALLKPEWFEKKGRLLPRAARPPPKLRPKVDSIGRLPAPTKPIPFTSENKTESSA*

Protein Length: 284

Fln nts: ATGGGGACACATAAAACGTGTGGTGTTTGCTGTCACTCAAAGAACACTCGTCCATCCCAACCGAGTACAGACGTGGGAAGGGATTGCCCTGCGCCTACATGAATTATGTTACACTTGAATCCTTTCTGAATTTCCTATCTAAAAATTAAATTAATCCGAGCTCAACTTATTTGACATCGGTTAAGTTTAATCCGGTGCACGTAGCCGATTCCTTCCCATTTTTGCAGGTTTAGGGTTCGGGGCTCGACGATGATTTCGAAGTCACAGGTCCAAAGGCTTGAATCAGGCAGCTGCTAAACATTTTCCGTAGATTTTTCAGTGCATTATGGGTGCCGATTTATTCACGCAATTTGGTAAACTGTTGGCACTTTATACTTACCCGTCTACTAGATGGTGAACACGCAATAAAACATGAGCATTTTCTGTTCTCGTATTCTGCATTTGCTGAAGATTTAGGACATATACATCACTGTTATGATCCTGTTAGCGAGGGTCAGTGAAATATTACACA_-_ATGATGATGATGATCAGGCGTCAATTCCTCAAGAGGATTTCTAATTTTGCAGTAGCAGCGGCATCTCATGCTTTTTCTTACCCTCCTGCTCCCAATAGAGTTTGTAATGGGCCATTCACGACAACAGCAGCGACATTTACCTCTGGATCAGCGTTGTGCAGTGGAGCAGCGCTAAATGCCGTAGGGGGCAGGAGGCTCCTGCTCTTAAATGATTTGCGGGACAACAAAGGGTCCAGAAAGAAGAAGACCCGCAAGGGCAGAGGAATTGGGTCTGGCAAGGGCAAAACAGCAGGTAGAGGGCACAAgGGTCAGAAGGCGAGAGGTGGTCATAAATTAGGATTCGAAGGTGGTCAGACCCCTCTTCGAAGATTATTGCCCCGCCGAGGGTTTAAGAATCCCTTCAGTCTTAGTTTCCAGCCTATTACCTTGGGGAAACTTGCAAGATATATAAATGCAGGTCGTATTGACTCTTCTGAACTGATTACAATGAAAACACTGAAGGATGTTGGAGCCATAGGAAAGCAGATTGAGGATGGTGTAAAACTGCTGGGGGGATCTGGGGCGAAGGACATCCAATGGCCCATTCATGTTGAGGTAAGCCGAGTTACGACACCAGCAAAAGAAGCAATTGAAGCTGCTGGAGGAAGTGTTAGGAGAGTTCATTACAATAGACTTGGCTTGCGAGCTCTTTTAAAGCCAGAATGGTTTGAAAAGAAGGGCCGTCTATTGCCACGAGCGGCACGCCCACCACCAAAGCTGCGACCTAAAGTTGACAGTATTGGTCGTCTACCTGCTCCAACCAAACCCATACCTTTTACAAGTGAAAACAAAACTGAATCGTCTGCTTAA___ACTAGTTAACGTTTGACCTTGGTTGTATTCGAGTAAGATTGGTTCAGAAAAGAATGTGATGGGTTTCGGAATCTAGATATTTTCAGTAATTTCTGTGGTTTGTAGAGAATCATTCTAGCTGGAAATCCTTGATACTAATCAGATTATACTACTCTGTTTTACCATTTTTTCTTTTTAGAAAGGTCCCTTGGCCTGTGGTACGCAAGGGGCACTCACTGTGAAGAGATCAAGGTTTAAATCTTGGGGACATCTTGCATTGCACCATTCTCCAAATGGTGCTATGAAATAAACAAATCTTAACTTGCACGAAATTTTTTCTCCACTGGGTTGATGTTATAAAAAGAGAAGTTTATTTGCCCTGAATGTGCATCCCATGTGGCTGTTGGCAAAGTGGATTGTATATCCAGTTCCATTGTGCAATTTACCACTTCAGATGAGTGGCCCCGTATTCTTTAACAGATGTTTCTCAATATTTGATTGAATAGTCGCACAATATTTTTGACATTATTACAATTTTACAAGTACAACCAGACATGTTTTTGGCTGTTCATT

Fln Alignment:

sp_v1.1_unigene35308___HKGQKARGGHKLGFEGGQTPLRRLLPRRGFKNPFSLSFQPITLGKLARYINAGRIDSSELITMKTLKDVGAIGKQIEDGVKLLGGSGAKDIQWPIHVEVSRVTTPAKEAIEAAGGSVRRVHYNRLGLRALLKPEWFEKKGXXXXXXXXXXXXXXXXVDSIGRLPAPTKPIPFTSENKTESS
B9N3V7_______________HKGQKARGTMKFGFEGGQTPMRRRLPKRGFKNPFSLTFQPVGLGKIARLINAGKIDSHELITMKTLKETGAIGKQIKDGVRLM-GRGAEKIQWPIHLEVSRVTVRAKQAVEAAGGSVRRVHYNQLGLRALLKPEWFEKKGRLLPKAARPPPKLRGKVDSIGRLPAPTKPIPFYTEEKEAAS

SNPs (tot: 60)

Position	A %	C %	G %	T %	Probability
964		14		85	0.993533
986		16		83	0.994512
1059	50		50		1.0
1188			50	50	1.0
1206		80		20	0.995493
1260	25	75			0.996473
1389	50	50			1.0
1392		50		50	1.0
1394		25		75	0.99649
1397	50	50			1.0
1398	50	50			1.0
1402	50		50		1.0
1403		50		50	1.0
1405		25	50	25	0.995535
1409		50		50	1.0
1413		25	75		0.996473
1423		20	80		0.995493
1426		20		80	0.995493
1427		80	20		0.995493
1428	60		20	20	0.99255
1432	80	20			0.995493
1433	80			20	0.995493
1434	80			20	0.995495
1436	80		20		0.995493
1437	80	20			0.995493
1438		16		83	0.994512
1441		33	66		1.0
1442	83		16		0.994512
1444		16	83		0.994512
1445	16		66	16	0.988814
1446		33	66		1.0
1447	14	28		57	1.0
1448			14	85	0.993533
1450		71	14		0.984337
1452		14	71	14	0.984337
1453	71		14	14	0.984337
1454	85		14		0.993533
1455		14		85	0.993533
1457	14			14	0.984337
1458		14		85	0.993533
1459	57		28	14	1.0
1460		14	85		0.993533
1461	85	14			0.993533
1463	85		14		0.993533
1466	14			85	0.993533
1467		14		85	0.993533
1530		14		85	0.993533
1531	85		14		0.993533
1533	85	14			0.993533
1534		85	14		0.993533
1539		14		85	0.993533
1540		85		14	0.993533
1543			14	85	0.993536
1544		14		85	0.993538
1546			14	85	0.993541
1547	85			14	0.993533
1549	14	85			0.993533
1550	85	14			0.993534
1552		16		83	0.994516
1553	16			83	0.994516

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain