SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene35212

Length: 1828 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene35212 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Flavonoid 3',5'-hydroxylase n=2 Tax=Cyclamen RepID=D0EUZ8_9ERIC	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	flavonoid 3 -hydroxylase	-	-	85%

Source	InterPros	Term	Type	Identity
Blast2go	Cytochrome P450	IPR001128	-	85%
Blast2go	Cytochrome P450, E-class, group I	IPR002401	-	85%
Blast2go	Cytochrome P450, conserved site	IPR017972	-	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PRW5

Fln msg:

Fln protein: MGTVGSEAIIDMESLNLDEFVKWFLSWLALYIGFRYVLRSRLKLKKRQLPPGPPGWPLVGSLPLLGAMPHVTLYNMYKKYGPVVYLKLGTSDMVVASTPAAAKAFLKTLDINFSNRPGNAGATYIAYDSQDMVWAAYGGRWKMERKVCNMHMLGGKALEDWQPVRDAEMGFMLRNILSHSQRGETVNVPDLLNICAANMIGQIILSKRVFETEGDEANEFKDMVVELMTSAGYFNIGDFIPSLAWMDLQGIQRGMKKLHKKWDALIQRMIEEHQSTAKQRASKPDFLDIVMSQRDNCDGQGGRLSDVHIKALLLNLFTAGTDTSSSVIEWTLAEVINNPRLLKRVHQEMDAVIGRERRLKESDLANLPYFVAVCKEGFRKHPSTPLSLPRVSTEACEVDGYYIPKNTRLMVNIWGIGRDPEVWEKPEEFNPDRFVGSKIDPRGNDFELIPFGAGRRICAGTRMGITMVEYNLGSLIHAFDWDVPPNQDGLNMDEAFGLALQKAVPLVAKATPRLPLHLY*

Protein Length: 521

Fln nts: _-_ATGGGGACAGTGGGCTCAGAGGCAATAATCGATATGGAGTCCTTGAATTTGGACGAATTTGTAAAGTGGTTTCTCTCGTGGCTTGCTCTCTACATCGGATTTCGTTATGTTTTGAGATCGAGGTTGAAGCTCAAGAAGAGGCAGCTCCCACCCGGGCCACCCGGATGGCCGTTGGTGGGGAGTCTGCCATTGCTGGGAGCGATGCCTCACGTTACCCTCTACAACATGTATAAGAAATACGGCCCCGTTGTCTATCTCAAACTGGGAACGTCTGACATGGTCGTGGCCTCGACGCCCGCTGCGGCTAAGGCGTTTCTGAAGACTTTGGATATAAATTTCTCCAACCGGCCAGGCAATGCGGGCGCCACGTACATTGCCTACGATTCTCAGGACATGGTGTGGGCAGCATACGGCGGACGATGGAAGATGGAACGCAAGGTGTGCAACATGCACATGTTGGGAGGGAAGGCGTTGGAAGATTGGCAGCCGGTGAGGGACGCAGAGATGGGCTTCATGCTCCGGAATATTCTCAGTCACTCGCAGCGCGGAGAGACGGTGAATGTGCCGGACCTCCTGAACATCTGCGCCGCCAACATGATCGGGCAGATCATTCTTAGCAAGCGGGTGTTCGAGACAGAAGGGGACGAGGCCAACGAGTTCAAGGACATGGTGGTGGAACTCATGACCTCCGCTGGATACTTCAATATCGGAGACTTCATTCCATCGCTAGCGTGGATGGACTTGCAGGGCATTCAGCGGGGTATGAAGAAGCTCCACAAGAAATGGGACGCACTTATACAGAGGATGATCGAGGAACACCAGTCCACGGCCAAGCAACGAGCGTCTAAGCCCGATTTCCTAGACATTGTGATGTCTCAGAGAGACAACTGCGATGGCCAAGGCGGAAGGCTCTCCGATGTTCATATCAAAGCTCTACTACTGAATTTATTCACAGCAGGAACCGATACGTCCAGCAGCGTGATCGAATGGACATTGGCGGAAGTAATCAACAACCCCAGGTTACTGAAGCGGGTGCATCAGGAGATGGACGCGGTGATCGGGCGTGAGAGGAGACTGAAGGAGTCGGACCTTGCGAACCTGCCCTACTTTGTGGCCGTCTGCAAAGAGGGATTTCGGAAGCACCCGTCCACGCCGCTCAGCCTCCCGCGCGTCTCCACCGAAGCGTGCGAGGTTGACGGTTACTACATTCCCAAGAACACTCGGCTAATGGTGAACATCTGGGGAATCGGGAGAGATCCGGAGGTGTGGGAGAAGCCGGAGGAGTTCAATCCAGACAGGTTTGTGGGTTCCAAGATCGATCCTCGGGGCAACGACTTCGAGCTCATCCCGTTTGGCGCAGGCAGGCGCATCTGTGCGGGCACTCGTATGGGGATTACTATGGTGGAGTACAATTTGGGTTCCTTAATCCATGCTTTCGATTGGGATGTGCCACCAAACCAAGACGGTCTGAACATGGACGAAGCATTCGGCCTGGCCCTGCAGAAGGCCGTGCCTCTGGTGGCCAAGGCGACTCCTCGCCTTCCTCTCCATCTCTACTAA___TTAGGTAGCTGTGATGTCAGCACTATCAAAAAGTTGTGAGGGATAAAAATAAAAGTTAAGGCGTTCTTTAGGTCGTCCAATATGCAAAATTTATGCACAGTCTATAGTATGTAGGTTTAAGGGACATTTAACAGCATACATCACCCTCTGAGGTTAGGTTATTTATTGCTGGTCCTTCAATATATGTCTATATCTATAGACAGAATTTGCATTTAGTTTCAAAATCCGTCAATATAGGTTTTTTGCATGTTCATTACTTAATATTTTC

Fln Alignment:

sp_v1.1_unigene35212___MESLNLDEFVKWFLSWLALYIGFRYVXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAMPHVTLYNMYKKYGPVVYLKLGTSDMVVASTPAAAKAFLKTLDINFSNRPGNAGATYIAYDSQDMVWAAYGGRWKMERKVCNMHMLGGKALEDWQPVRDAEMGFMLRNILSHSQRGETVNVPDLLNICAANMIGQIILSKRVFETEGDEANEFKDMVVELMTSAGYFNIGDFIPSLAWMDLQGIQRGMKKLHKKWDALIQRMIEEHQSTAKQRASKPDFLDIVMSQRDNCDGQGGRLSDVHIKALLLNLFTAGTDTSSSVIEWTLAEVINNPRLLKRVHQEMDAVIGRERRLKESDLANLPYFVAVCKEGFRKHPSTPLSLPRVSTEACEVDGYYIPKNTRLMVNIWGIGRDPEVWEKPEEFNPDRFVGSKIDPRGNDFELIPFGAGRRICAGTRMGITMVEYNLGSLIHAFDWDVPPNQDGLNMDEAFGLALQKAVPLVAKATPRLPLHLY
C0PRW5_______________MDSLNLHEFMLWVLSWLALYLGFRYVLRSSLKLKKRHLPPGPSGWPLLGSLPLLGAMPHVTLYNMYKKYGPIVYLKLGTSDMVVASTPAAAKAFLKTLDINFSNRPGNAGATYIAYDSQDMVWAAYGGRWKMERKVCNLHMLGGKALEDWQPVRDAEMGFMLQNILKHSQRGETVNVPDLLNICAANMIGQIILSKRVFETEGDEANEFKDMVVELMTSAGYFNIGDFIPSLAWMDLQGIQRGMKKLHKRWDALIARMIEEHQSTAKQRASRPDFLDIVMSQRDNCDGQGGRLSDVHIKALLLNLFTAGTDTSSSVIEWTLAELINNPKLLKRVQHEMDTVIGRERRLKESDLANLPYFVAVCKEGFRKHPSTPLSLPRVSTEACEVNGHYIPKNTRLMVNIWGIGRDPEVWEKPEEFNPERFVGSKIDPRGNDFELIPFGAGRRICAGTRMGITMVEYNLGSLIHAFNWDLPPNQDGLNMDEAFGLALQKAVPLVAMASPRLPLHLY

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
94	25		75		0.996473
118		50		50	1.0
125	50		50		0.999996
146		50	50		0.999973
148		50	50		0.999983
158		50		50	0.999989
169	50	50			0.999989
690		88		11	0.991528
691	11		88		0.991528
1136	9		90		0.999842
1597	94	5			0.998397
1598		5	94		0.998397
1599		5		94	0.998397
1600	5			94	0.998397
1853		7		46	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain