SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene35058

Length: 867 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene35058

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GATA transcription factor 12 n=2 Tax=Arabidopsis thaliana RepID=GAT12_ARATH	-	-	6.0e-37	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	protein	-	-	1.07346e-36	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	circadian rhythm	GO:0007623	Biological Process	1.07346e-36	60%
Blast2go	response to light stimulus	GO:0009416	Biological Process	1.07346e-36	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, GATA-type	IPR000679	-	1.07346e-36	60%
Blast2go	Zinc finger, NHR/GATA-type	IPR013088	-	1.07346e-36	60%

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
311	33		66		0.997464
314		66	33		0.997453
315	66		33		0.997453
418		80		20	0.995493
448	25		75		0.996473
486	20			80	0.995493
493		20		80	0.995493
496	20	80			0.995493
514		20		80	0.995493
517	16		83		0.994512
523		16		83	0.994512
539		16	83		0.994512
553		83	16		0.994512
559		83		16	0.994512
570	83		16		0.994512
571		16		83	0.994512
574	83		16		0.994512
601	20		80		0.995493
605		20	80		0.995493
613		20		80	0.995493
616		80		20	0.995493
634		20	80		0.995493
690		75		25	0.996473
697	25		75		0.996473
706			25	75	0.996474
719	75		25		0.996474
722		75		25	0.996473
723			75	25	0.996473
724	25			75	0.996473
728			75	25	0.996473
749		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain