SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene35048

Length: 260 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene35048
AAGATGGTGGAGCAATACAGATATTATCCCCGAGTTAGAGACTCAAATTCGTGGTATTCATGCGTTGGTGGGAAACGCCGTGACAGAAGGGAGATATATAGTGATTGGAACCGGCTCTAAGCAGCTTATCAACGCTGCAGTTTACAGTCTTTCTCCTAGGCGTGAAGATGCTCAACATCCTGCCCACGTTGTCGCAGTTCCGCCCCATTACGGAACATACAGAACCCAGACTCAAATGTTTGACTCTGCCGACTATAGCT

Ace file of the UniGene sp_v1.1_unigene35048

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	alliinase family protein [Arabidopsis thaliana] gb\|AAG12531.1\|AC015446_12 Similar to Allinase [Arabidopsis thaliana]	-	-	1.0e-11	42%
FL-Next	sp=Tryptophan aminotransferase-related protein 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	42%
Blast2go	alliin lyase	-	-	7.07767e-15	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Allinase, C-terminal	IPR006948	-	7.07767e-15	67%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	7.07767e-15	67%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	7.07767e-15	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q93Z38

Fln msg: Distance to subject end: 253 aas, your sequence is shorter than subject: 86 - 463

Fln protein: RWWSNTDIIPELETQIRGIHALVGNAVTEGRYIVIGTGSKQLINAAVYSLSPRREDAQHPAHVVAVPPHYGTYRTQTQMFDSADYS

Protein Length: 87

Fln nts: AAGATGGTGGAGCAATACAGATATTATCCCCGAGTTAGAGACTCAAATTCGTGGTATTCATGCGTTGGTGGGAAACGCCGTGACAGAAGGGAGATATATAGTGATTGGAACCGGCTCTAAGCAGCTTATCAACGCTGCAGTTTACAGTCTTTCTCCTAGGCGTGAAGATGCTCAACATCCTGCCCACGTTGTCGCAGTTCCGCCCCATTACGGAACATACAGAACCCAGACTCAAATGTTTGACTCTGCCGACTATAGCT

Fln Alignment:

sp_v1.1_unigene35048___TDIIPELETQIRGIHALVGNAVTEGRYIVIGTGSKQLINAAVYSLSPRREDAQHPAHVVAVPPHYGTYRTQTQMFDSA
Q93Z38_______________TYVSRELEKVIRKLHSVVGNAVTDNRFVIFGSGTTQLLAAAVHALSLTNSSVSSPARLLTSIPYYAMYKDQAEFFDSA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
100	75		25		0.996473
161	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain