SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene34990

Length: 2003 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene34990
TATAAGCAACAAACACGTTGAATGTGAAAACCCATTACCAATTGTGGCAGGGATAACACCCGTTGTTCTTAATACAAATACACAGTAGCAGGGGAAAGACCGATAATTGTTATCTGGATTAAAATCAACAAATTGTTTCTGCCTATGTGAAGCCACTCAAGCAAACAATATTTTACTTTCCAGAATTATGAAGCTCACCCATGGTTGTTCTTCTCATTCTACTTTCTTTCCTGTACATCTTGTGTCTCTGTACACTCACTCTATAGTAAGAACTTCTGCTCCGTAGTAGAGAAGTTAAAATGGTTTGGATGGGAAAATCTGAAGAACACTAGAGAAGTTAAAATGGTTTGGATGGGAAAATCTGAAGAACACAAATATTTATAGCGGTACGGTAAAATAAAAAATATATTAGAATGCTTTTTACATTTTGTATCCAAGTTATAGCTTTCTAAGAGGTCATATAACCTTTCATGTCGAAATGTTTATCTGGAACTTTGAGGCGAAATTATGTCCACCTTAGGCTAGTCAAATGGAAATCTAAGATGACTCACACTATCATCACTTGCAGTGATATTGTATGTATGGTGATGATACTATCCACAATCTTACAGTGGAACCCGCATCGTTTTCTTAGTTTCTGGAACAAAATAACATCCTAAAATTTCCAGAAATTTGGCCACATCGCAGAGGACCAGCACCAGCATTATAGTCACAGTGGAGAGCAATTAAATACACTCTCGGGATTTTAACATAAGGTTTTAAGCATTTATTATCATTTCAAGTCTGCAGGCAGGGAATTATCAGTGTGAACATGGGTAGCAAAGAAACTGTATGTGTAACTGGAGCTAGTGGATTCATCGGGTCATGGGTTGTTCGTTTGCTGTTAGAACGAGGCTACTTTGTGCACGGAACTGTTCAAGATCTCGGAAATGAGAAGGAGACTAAGCACCTAGAGGCCATGGAAGGAGCCAAGGAGAGACTGAAATTGTTTCAAATAGATCTGCTGGATTATGGTTCTATCGAGGCTGCCATTACTGGGTCTGTTGGTGTTTTCCATTTAGCGTCTCCATGTATTGTCGACGAAGTCAAGAACCCACAAGCCCAGCTTTTGGATCCTGCAGTTAAGGGTACCNTGCATGTCTTGCAAGCAGCCCAAAAAGAAAAAGTGTGAAACGTTTGGTGTTAACCTCCTCAACCGCTGCAACCGTTCCCAGTCCAAACTGGCCTGCAGATGTGCCAAAGGACGAGAACTGTTGGACTGATCTTGATTACTGCAAAGAAAATGGGATCTGGTATTCTGCATCAAAAACACTTGCTGAAAAAACAGCTTGGAATTTTGCCAAAGAGACTGGTTTGGATGTGGTTGTTATCAATCCAGGAGCTGTGATGGGACCGATCCTGCCTCCGACAATCAATGCCAGTATGGCCATGTTTCTTCAGCTTCTTCAAGGTGGCACAGAAAAATATCAGAATTTGTACACAGGCTGCGTACATGTAAAAGATGTTGCAAAAGGACATATCTTACTATATGAAACCCCGTCAGCGTCAGGAAGGCACATTTGCGTTGAAGCAACAATCCATTGGAGTGACTTTGCTGAGATGGTGGAAAAACTATATCCTGAATATAAAATACACAGGTTCACAGAAGTGACACAACCTGGTTTGTTACGAGATAAGAATGCTGCAAAGAAATTGATGGATCTGGGTCTCGTTTTTACACCCATGGAGCAAGTAATTAAGGAGGCAGTTTCTAGTTTAAAAGAAAAAGGCTTCTTGAATTGAGTAATGACTATTTGTATGATCAGATCTTATGTAGTGTGAAAATGAAGACCAACGGACTTCCTATCCAACCGCAAAGAGAAATATTTCTGAATTAGTCTATGTGGACCCACTGAATGATGTTCATCGTTTTCCATTGTATATCATGCATGTCAGCTTGTTTGAGATGATTGTCATTATAGTCAACTCTTGTAAATTTGAACACTACCTTTCTAAGGATTTGA

Ace file of the UniGene sp_v1.1_unigene34990 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cinnamoyl-CoA reductase n=1 Tax=Camellia oleifera RepID=C3VPA5_9ERIC	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	cinnamoyl- reductase	-	-	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NAD(P)-binding domain	IPR016040	-	0.0	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU33

Fln msg: Overlapping hits, possible frame ERROR between 1168 and 1156,

Fln protein: MGSKETVCVTGASGFIGSWVVRLLLERGYFVHGTVQDLGNEKETKHLEAMEGAKERLKLFQIDLLDYGSIEAAITGSVGVFHLASPCIVDEVKNPQAQLLDPAVKGTMHVLQAAxxxxxxKRLVLTSSTAATVPSPNWPADVPKDENCWTDLDYCKENGIWYSASKTLAEKTAWNFAKETGLDVVVINPGAVMGPILPPTINASMAMFLQLLQGGTEKYQNLYTGCVHVKDVAKGHILLYETPSASGRHICVEATIHWSDFAEMVEKLYPEYKIHRFTEVTQPGLLRDKNAAKKLMDLGLVFTPMEQVIKEAVSSLKEKGFLN*

Protein Length: 325

Fln nts: TATAAGCAACAAACACGTTGAATGTGAAAACCCATTACCAATTGTGGCAGGGATAACACCCGTTGTTCTTAATACAAATACACAGTAGCAGGGGAAAGACCGATAATTGTTATCTGGATTAAAATCAACAAATTGTTTCTGCCTATGTGAAGCCACTCAAGCAAACAATATTTTACTTTCCAGAATTATGAAGCTCACCCATGGTTGTTCTTCTCATTCTACTTTCTTTCCTGTACATCTTGTGTCTCTGTACACTCACTCTATAGTAAGAACTTCTGCTCCGTAGTAGAGAAGTTAAAATGGTTTGGATGGGAAAATCTGAAGAACACTAGAGAAGTTAAAATGGTTTGGATGGGAAAATCTGAAGAACACAAATATTTATAGCGGTACGGTAAAATAAAAAATATATTAGAATGCTTTTTACATTTTGTATCCAAGTTATAGCTTTCTAAGAGGTCATATAACCTTTCATGTCGAAATGTTTATCTGGAACTTTGAGGCGAAATTATGTCCACCTTAGGCTAGTCAAATGGAAATCTAAGATGACTCACACTATCATCACTTGCAGTGATATTGTATGTATGGTGATGATACTATCCACAATCTTACAGTGGAACCCGCATCGTTTTCTTAGTTTCTGGAACAAAATAACATCCTAAAATTTCCAGAAATTTGGCCACATCGCAGAGGACCAGCACCAGCATTATAGTCACAGTGGAGAGCAATTAAATACACTCTCGGGATTTTAACATAAGGTTTTAAGCATTTATTATCATTTCAAGTCTGCAGGCAGGGAATTATCAGTGTGAAC_-_ATGGGTAGCAAAGAAACTGTATGTGTAACTGGAGCTAGTGGATTCATCGGGTCATGGGTTGTTCGTTTGCTGTTAGAACGAGGCTACTTTGTGCACGGAACTGTTCAAGATCTCGGAAATGAGAAGGAGACTAAGCACCTAGAGGCCATGGAAGGAGCCAAGGAGAGACTGAAATTGTTTCAAATAGATCTGCTGGATTATGGTTCTATCGAGGCTGCCATTACTGGGTCTGTTGGTGTTTTCCATTTAGCGTCTCCATGTATTGTCGACGAAGTCAAGAACCCACAAGCCCAGCTTTTGGATCCTGCAGTTAAGGGTACCaTGCATGTCTTGCAAGCAGCCxxxxxxxxxxxxxxxxxxAAACGTTTGGTGTTAACCTCCTCAACCGCTGCAACCGTTCCCAGTCCAAACTGGCCTGCAGATGTGCCAAAGGACGAGAACTGTTGGACTGATCTTGATTACTGCAAAGAAAATGGGATCTGGTATTCTGCATCAAAAACACTTGCTGAAAAAACAGCTTGGAATTTTGCCAAAGAGACTGGTTTGGATGTGGTTGTTATCAATCCAGGAGCTGTGATGGGACCGATCCTGCCTCCGACAATCAATGCCAGTATGGCCATGTTTCTTCAGCTTCTTCAAGGTGGCACAGAAAAATATCAGAATTTGTACACAGGCTGCGTACATGTAAAAGATGTTGCAAAAGGACATATCTTACTATATGAAACCCCGTCAGCGTCAGGAAGGCACATTTGCGTTGAAGCAACAATCCATTGGAGTGACTTTGCTGAGATGGTGGAAAAACTATATCCTGAATATAAAATACACAGGTTCACAGAAGTGACACAACCTGGTTTGTTACGAGATAAGAATGCTGCAAAGAAATTGATGGATCTGGGTCTCGTTTTTACACCCATGGAGCAAGTAATTAAGGAGGCAGTTTCTAGTTTAAAAGAAAAAGGCTTCTTGAATTGA___GTAATGACTATTTGTATGATCAGATCTTATGTAGTGTGAAAATGAAGACCAACGGACTTCCTATCCAACCGCAAAGAGAAATATTTCTGAATTAGTCTATGTGGACCCACTGAATGATGTTCATCGTTTTCCATTGTATATCATGCATGTCAGCTTGTTTGAGATGATTGTCATTATAGTCAACTCTTGTAAATTTGAACACTACCTTTCTAAGGATTTGA

Fln Alignment:

sp_v1.1_unigene34990___MGSKETVCVTGASGFIGSWVVRLLLERGYFVHGTVQDLGNEKETKHLEAMEGAKERLKLFQIDLLDYGSIEAAITGSVGVFHLASPCIVDEVKNPQAQLLDPAVKGTMHVLQAAxxxxxKRLVLTSSTAATVPSPNWPADVPKDENCWTDLDYCKENGIWYSASKTLAEKTAWNFAKETGLDVVVINPGAVMGPILPPTINASMAMFLQLLQGGTEKYQNLYTGCVHVKDVAKGHILLYETPSASGRHICVEATIHWSDFAEMVEKLYPEYKIHRFTEVTQPGLLRDKNAAKKLMDLGLVFTPMEQVIKEAVSSLKEKGFLN
A9NU33_______________MGSKETVCVTGASGFIGSWIVRLLLERGYSVQGTVQDLGNEKETKHLEAMEGAKERLKLFQMDLLDYGSIEAAINGSVGVFHLASPNIIEEVENPQAQLLDPAVKGTKHVLQAAxxxxxKRLVLTSSTSAIIPSPNWPANVPKDENCWTDLDYCKENGIWYPVSKTLAEKTAGDFAKETGLDVVVINPGPVMGPILPPAINASMTMFRQLLQGGTEGYQNIYMGCVHVKDVAEGHILLYETSSASGRHLCIEAITHWSDFAEMVAKLYPEYKIHRFTEVTQPGLLRVQNASKKLMDLGLVFTPMEQVIKDSLSSLKEKGFLN

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1721	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain