SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene34895

Length: 546 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene34895
AGTATTGCCCAAGTAACAAGTGGTGCCTGTTCAATAACTGCTCTAGTATTTTCATCGTGCCATTCATTCCATAAACGTAGATTCTCAAACAATTTCAGAACTCACATTGAGAAGGTTAAAGCTGGACTTTTTAATGCATGGAGGTTCTGTGACTGGCTGTCTAGCTGATGCTACACATGCAATCATATTTTCTACAGCTGAGCATGCAGTGCCTTTCAAATCAATTCTAGTAAGCTTAACGACTGCAGAAAGAAATGTACTCCAGCGAAAAGGAATACCAGTTGTGAGTCATGTATGGTTAGAGGATTCCTTGCAAGAACAGAGGAAGCTGCCAGAAAGTGCCTATAGTTTGAGAAACAACATACATGTCCATGAAGCTTCACTCACTAAAGGAATGGAGGATCCAGTAGCCAGTTTACATGAAAGTAATTCAGCACACAAGAACATCCAACAGTGCACGGAAACACCTGAAAGGATTGATGATTCAGAGAAGCATTCGGCAAGCCAGAGTGCAAAACAAAGAGCAGCAATGGCCCATAGGGAAAC

Ace file of the UniGene sp_v1.1_unigene34895

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA ligase (Fragment) n=2 Tax=Vitis vinifera RepID=D7SQI2_VITVI	-	-	3.0e-16	42%
FL-Next	sp=Putative DNA ligase 4; Oryza sativa subsp. japonica (Rice).	-	-	0.0	47%
Blast2go	dnli4_orysj ame: full= dna ligase 4 ame: full=dna ligase iv ame: full=polydeoxyribonucleotide synthase 4	-	-	4.86838e-16	59%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA ligase (ATP).	EC:6.5.1.1	-	4.86838e-16	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	double-strand break repair	GO:0006302	Biological Process	4.86838e-16	59%
Blast2go	DNA integration	GO:0015074	Biological Process	4.86838e-16	59%
Blast2go	response to X-ray	GO:0010165	Biological Process	4.86838e-16	59%
Blast2go	telomere maintenance	GO:0000723	Biological Process	4.86838e-16	59%
Blast2go	protein binding	GO:0005515	Molecular Function	4.86838e-16	59%
Blast2go	DNA ligase (ATP) activity	GO:0003910	Molecular Function	4.86838e-16	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	BRCT domain	IPR001357	-	4.86838e-16	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q7X7E9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 322 aas, your sequence is shorter than subject: 181 - 1322

Fln protein: VLPK*QVVPVQ*LL*YFHRAIHSINVDSQTISELTLRRLKLDFLMHGGSVTGCLADATHAIIFSTAEHAVPFKSILVSLTTAERNVLQRKGIPVVSHVWLEDSLQEQRKLPESAYSLRNNIHVHEASLTKGMEDPVASLHESNSAHKNIQQCTETPERIDDSEKHSASQSAKQRAAMAHRE

Protein Length: 182

Fln nts: AGTATTGCCCAAGTAACAAGTGGTGCCTGTTCAATAACTGCTCTAGTATTTTCATCGTGCCATTCATTCCATAAACGTAGATTCTCAAACAATTTCAGAACTCACATTGAGAAGGTTAAAGCTGGACTTTTTAATGCATGGAGGTTCTGTGACTGGCTGTCTAGCTGATGCTACACATGCAATCATATTTTCTACAGCTGAGCATGCAGTGCCTTTCAAATCAATTCTAGTAAGCTTAACGACTGCAGAAAGAAATGTACTCCAGCGAAAAGGAATACCAGTTGTGAGTCATGTATGGTTAGAGGATTCCTTGCAAGAACAGAGGAAGCTGCCAGAAAGTGCCTATAGTTTGAGAAACAACATACATGTCCATGAAGCTTCACTCACTAAAGGAATGGAGGATCCAGTAGCCAGTTTACATGAAAGTAATTCAGCACACAAGAACATCCAACAGTGCACGGAAACACCTGAAAGGATTGATGATTCAGAGAAGCATTCGGCAAGCCAGAGTGCAAAACAAAGAGCAGCAATGGCCCATAGGGAAAC

Fln Alignment:

sp_v1.1_unigene34895___YFHRAIHSINVDSQTISELTLRRLKLDFLMHGGSVTGCLADATHAIIFSTAEHAVPFKSILVSLTTAERNVLQRKGIPVVSHVWLEDSLQEQRKLPESAYSLR
Q7X7E9_______________YFYHA-PLVNADYNVISDLALKRVKQDLTMHGGQVCSILAPATHLIIVSVLQ-AYNFDMLYKSLPPAERRYLHDKRLQVVSNKWLEDSVEKQTRLPETTYSLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain