SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene34891

Length: 1188 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene34891 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)	-	-	5.0e-08	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	protein	-	-	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	75%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWT7

Fln msg: Distance to subject end: 55 aas, your sequence is shorter than subject: 322 - 376

Fln protein: MAAGNRKVSAAAARAHTRKGKSDKSSDALGGGILRKLAIVLMVGFLAWAYKSIQPPPSAICGSLNGPPVIAPRIRLQDGRHLAYRESGVPRERAKYKIIMAHGFTGSRNDTFPASEEIVEELGVYIVTFDRPGYGESDPHPKRSVRSAALDIEQLADQLDLGPKFYVMSFSLGGHAVWGSLKYIPHRLAGAALLAPVINYRWPGFPVNLSKEAYYQQARQDQWALRVAYYTPWLTYWWNTQKWFPSSSVIQGTWKPLNRHDRELGRKLAASGRSAERLKAALQQGLFESLHRDLMVMFGKWDFDPLELNNPFPNNDVPVHIW

Protein Length: 323

Fln nts: ATGGGGGGAGGTAAGTGTTGTGATAATTGCAATTGGAGATTTGTTTCTGTAGGGAAAATCCTGGCAGGAAGCATAGTGAAAGCCCTGTTTTTGCATTTGGGTATTTTCCATATGCATTGAGCCCTCTTGGTGTGGTCGATTTTATTGGGAGGCTGCCGAGATAAGCGCCTTTTCTTTCTCTTTATTTTAGTTTTCTGGGAGGCATAGTATATTTTATAGAAT_-_ATGGCTGCTGGGAACCGAAAAGTTTCGGCTGCAGCTGCCCGAGCCCATACCAGAAAGGGCAAGTCAGACAAAAGCTCTGATGCATTGGGTGGAGGTATATTGAGAAAATTAGCCATTGTTTTAATGGTGGGGTTCCTTGCATGGGCATACAAGTCCATCCAGCCGCCCCCTTCTGCTATCTGTGGATCTCTGAATGGCCCTCCAGTTATTGCCCCTCGTATTCGGCTTCAAGATGGAAGACATTTGGCCTACAGGGAAAGTGGAGTTCCCAGAGAGAGAGCAAAGTATAAGATCATTATGGCACATGGTTTTACAGGATCCAGAAATGATACCTTTCCAGCTTCTGAGGAAATTGTGGAAGAGCTGGGAGTGTACATTGTAACCTTCGACAGGCCTGGGTACGGAGAAAGCGATCCTCATCCTAAGCGATCTGTAAGAAGTGCGGCTTTAGATATTGAACAGCTTGCAGACCAACTTGATCTTGGTCCCAAATTTTATGTGATGAGCTTCTCCCTTGGGGGACACGCGGTATGGGGATCCCTCAAATATATACCACACAGGTTAGCGGGTGCTGCACTCTTAGCACCTGTAATAAACTACAGGTGGCCTGGTTTCCCAGTTAATTTATCTAAAGAAGCTTATTATCAGCAAGCCCGACAGGATCAATGGGCACTTCGTGTTGCTTATTATACCCCTTGGCTGACTTATTGGTGGAATACCCAAAAATGGTTTCCTTCTTCAAGCGTTATTCAAGGGACATGGAAACCTCTGAACAGGCATGACCGGGAGCTAGGCCGCAAATTAGCTGCGAGTGGAAGATCTGCTGAACGTTTGAAGGCAGCATTGCAGCAAGGATTGTTTGAGTCTCTACATCGAGACCTGATGGTCATGTTTGGCAAGTGGGATTTTGATCCTTTGGAACTCAATAACCCGTTTCCTAACAATGATGTTCCAGTTCATATATGG

Fln Alignment:

sp_v1.1_unigene34891___MAAGNRKVSAAAARAHTRKGKSDKSSDALGGGILRKLAIVLMVGFLAWAYKSIQPPPSAICGSLNGPPVIAPRIRLQDGRHLAYRESGVPRERAKYKIIMAHGFTGSRNDTFPASEEIVEELGVYIVTFDRPGYGESDPHPKRSVRSAALDIEQLADQLDLGPKFYVMSFSLGGHAVWGSLKYIPHRLAGAALLAPVINYRWPGFPVNLSKEAYYQQARQDQWALRVAYYTPWLTYWWNTQKWFPSSSVIQGTWKPLNRHDRELGRKLAASGRSAERLKAALQQGLFESLHRDLMVMFGKWDFDPLELNNPFPNNDVPVHIW
A9NWT7_______________MTAGNRRVSAAAARTHTRKGKSDKRSAASSRGILRKLAIVSIAGFLACAYKAIQPPPSAICGSPDGPPVTAPRIRLQDGRHLAYKESGVPRERAKYKIIMTHGFTGSRNDTFQASEELMEELGVYLVTFDRPGYGESDPHPKRSVRSAAFDIEEFADQLDLGPKFYVMGFSLGGHAIWGCLKYIPNRLAGAALLAPVINYRWPGFPANLSEEAYYEQARQDQWALRVPYYAPWLTYWWMSQKWFPSSSVIQGTWKPLNRHDRELGLKLAASGRSPERLKAALQQGVFESLHRDLMVMFGKWDFDPMEL-NPFPNNDVPVHIW

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1074			90	10	0.902987
1076	10		90		0.902987
1077		90	10		0.90298
1079		90	10		0.90298
1081	90	10			0.90298
1082	10			90	0.90298
1086		10		90	0.90298
1088	11			88	0.923564
1091	88			11	0.923564
1092	88	11			0.923564
1094	88	11			0.923566
1095			11	88	0.923564
1098		88	11		0.923566
1117	33			66	1.0
1123			33	66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain