SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene34878

Length: 653 nt

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene34878

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Autoinhibited calcium ATPase (Fragment) n=1 Tax=Populus trichocarpa RepID=B9IN45_POPTR	-	-	70%
FL-Next	sp=Calcium-transporting ATPase 8, plasma membrane-type; Arabidopsis thaliana (Mouse-ear cress).	-	-	75%
Blast2go	cation-transporting atpase	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Calcium-transporting ATPase.	EC:3.6.3.8	-	0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	pollen development	GO:0009555	Biological Process	85%
Blast2go	response to nematode	GO:0009624	Biological Process	85%
Blast2go	single fertilization	GO:0007338	Biological Process	85%
Blast2go	calcium-transporting ATPase activity	GO:0005388	Molecular Function	85%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	85%
Blast2go	protein self-association	GO:0043621	Molecular Function	85%
Blast2go	plasma membrane	GO:0005886	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ATPase, P-type, ATPase-associated domain	IPR008250	-	0.0	85%
Blast2go	ATPase, P-type, transmembrane domain	IPR023298	-	0.0	85%

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
121		66	33		0.997452
145	66	33			0.997452
151		66	33		0.997452
154		33		66	0.997452
163	33		66		0.997452
175	66		33		0.997452
194			33	66	0.997452
219	33	66			0.997453
222	33		66		0.997452
225		66	33		0.997452
226	66	33			0.997452
239		66		33	0.997476
247		66		33	0.997454
250		33		66	0.997454
258		66	33		0.997452
262		66		33	0.997452
265	66		33		0.997453
282	25			75	0.996481
287			25	50	0.995571
288			25	75	0.996477
325	25	75			0.996476
331		66		33	0.997452
409		66		33	0.997457

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain