SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene34862

Length: 522 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene34862
GCAGAAACTGATTTGCAAAGAAAGATACAAGAAACGTGTTGATGAAGAAAGGAGACATCTTTCTAAGCGTGATTTGGAACGTGAAAAAGAGTGTGGAATATGTATGGAGATTCAGACCAAAGTTGTATTGCCTAACTGCAGTCATGCAATGTGTTTGAATTGCTATCGGGAATGGCATGCACGATCAGAATCATGCCCTTTCTGCAGGGGTAGCTTGAAAAGAGTCAATTCAACAGACTTGTGGATTTTAACAAGTAGTGAAGAAGTTGTTGACATGGAAAGATTGGGCAGAGAGAACTTAAGAAGGCTATTTAATTACATTGATAATTTGCCAGATACATTTCCGGGGATCCCGCTTAGACTGTTTCTTGTTTATGATTCCTATAATAATTGCTATGTGTCGCCGATGTATCTATCTGACAGGGATCCTGAGGACAGAGGGGCATTTGGTATGTGATGCAGGTGTATCTATCTGACAGGGATCCTGAGGACAGAAGGGAATTTGGTCTTTGAGAGGACTGA

Ace file of the UniGene sp_v1.1_unigene34862

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger, RING-type [Medicago truncatula]	-	-	5.00264e-43	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	protein	-	-	0.0	75%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	75%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	75%
Blast2go	Zinc finger, RING-type, conserved site	IPR017907	-	75%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADL3

Fln msg: your sequence is shorter than subject: 152 - 280

Fln protein: QKLICKERYKKRVDEERRHLSKRDLEREKECGICMEIQTKVVLPNCSHAMCLNCYREWHARSESCPFCRGSLKRVNSTDLWILTSSEEVVDMERLGRENLRRLFNYIDNLPDTFPGIPLRLFLVYDSYNNCYVSPMYLSDRDPEDRGAFGM*

Protein Length: 153

Fln nts: GCAGAAACTGATTTGCAAAGAAAGATACAAGAAACGTGTTGATGAAGAAAGGAGACATCTTTCTAAGCGTGATTTGGAACGTGAAAAAGAGTGTGGAATATGTATGGAGATTCAGACCAAAGTTGTATTGCCTAACTGCAGTCATGCAATGTGTTTGAATTGCTATCGGGAATGGCATGCACGATCAGAATCATGCCCTTTCTGCAGGGGTAGCTTGAAAAGAGTCAATTCAACAGACTTGTGGATTTTAACAAGTAGTGAAGAAGTTGTTGACATGGAAAGATTGGGCAGAGAGAACTTAAGAAGGCTATTTAATTACATTGATAATTTGCCAGATACATTTCCGGGGATCCCGCTTAGACTGTTTCTTGTTTATGATTCCTATAATAATTGCTATGTGTCGCCGATGTATCTATCTGACAGGGATCCTGAGGACAGAGGGGCATTTGGTATGTGA___TGCAGGTGTATCTATCTGACAGGGATCCTGAGGACAGAAGGGAATTTGGTCTTTGAGAGGACTGA

Fln Alignment:

sp_v1.1_unigene34862___QKLICKERYKKRVDEERRHLSKRDLEREKECGICMEIQTKVVLPNCSHAMCLNCYREWHARSESCPFCRGSLKRVNSTDLWILTSSEEVVDMERLGRENLRRLFNYIDNLPDTFPGIPLRLFLVYDSYNNCYV
D5ADL3_______________QKVICKERYKKNVDEERRHLSELDLEREKECGICMETESKVVLPNCSHAMCLNCYREWHARSESCPFCRDSLKRVNSTDLWIFTSNEEVVDMETLGRENLKMLFNYIDKLPLI---VPESLFYVYDSHYDSYM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain