SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene34787

Length: 555 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene34787
ATAAGTAGGAAACAATTTACATTGTGTGCACAGGCTCTAATATAAAATTTTGAACCTGAAACAGTTTCGGATTATTTCAAGTTCATATTCCTACGTTGGTAGAGCATATTTCATGGAAAGTGGCATGGAGAAACCTGGTTTAACTCAGGTTCATGGCAATGACACAGATGCGTTGAGGGAACCGCTTATCGAAACGCGGTTGCTTTCCGCGTCTGGGGACGAACACAAGTCTGGTATTTATGAAGTAGAGCCTTCTGATGATGTGAAAGTCACTGCAAGGGTTGTATGGCAAGAAGTCAAAAAGCTGTGCTGGATAGCAGGACCTATGATTGCAGTGAATCTGCTTCAGTATTGCTTGAGCACGATATCTGTTATAATGTGGGGCATCTGGGAGAGCTTGCACTTTCCAGTGCTTCTATGGCCACTTCTTTTACAAATGTTACCGGGTTACATGTGTTGATGGGGATGGCAGGTGCATTGGAGACACTTTGTGGACAGGCATATGGAGCAAAGCAATATCATTTGCTTGGGATTCAACTGCAGAGAGGAATTTTT

Ace file of the UniGene sp_v1.1_unigene34787

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[V] COG0534 Na+-driven multidrug efflux pump	-	-	6.0e-10	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	30%
Blast2go	transparent testa 12	-	-	7.82194e-26	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to nematode	GO:0009624	Biological Process	7.82194e-26	83%
Blast2go	plasma membrane	GO:0005886	Cellular Component	7.82194e-26	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Multi antimicrobial extrusion protein	IPR002528	-	7.82194e-26	83%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVJ0

Fln msg: Separated hits, possible frame ERROR between 352 and 382, Distance to subject end: 374 aas, your sequence is shorter than subject: 148 - 503

Fln protein: MESGMEKPGLTQVHGNDTDALREPLIETRLLSASGDEHKSGIYEVEPSDDVKVTARVVWQEVKKLCWIAGPMIAVNLLQxxxxxxxxxxxGHLGELALSSASMATSFTNVTGLHVLMGMAGALETLCGQAYGAKQYHLLGIQLQRGIF

Protein Length: 149

Fln nts: ATAAGTAGGAAACAATTTACATTGTGTGCACAGGCTCTAATATAAAATTTTGAACCTGAAACAGTTTCGGATTATTTCAAGTTCATATTCCTACGTTGGTAGAGCATATTTC_-_ATGGAAAGTGGCATGGAGAAACCTGGTTTAACTCAGGTTCATGGCAATGACACAGATGCGTTGAGGGAACCGCTTATCGAAACGCGGTTGCTTTCCGCGTCTGGGGACGAACACAAGTCTGGTATTTATGAAGTAGAGCCTTCTGATGATGTGAAAGTCACTGCAAGGGTTGTATGGCAAGAAGTCAAAAAGCTGTGCTGGATAGCAGGACCTATGATTGCAGTGAATCTGCTTCAGTAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGGGCATCTGGGAGAGCTTGCACTTTCCAGTGCTTCTATGGCCACTTCTTTTACAAATGTTACCGGGTTACATGTGTTGATGGGGATGGCAGGTGCATTGGAGACACTTTGTGGACAGGCATATGGAGCAAAGCAATATCATTTGCTTGGGATTCAACTGCAGAGAGGAATTTTT

Fln Alignment:

sp_v1.1_unigene34787___DTDALREPLIETRLLSASGDEHKSGIYEVEPSDDVKVTARV-VWQEVKKLCWIAGPMIAVNLLQYxxxxxxxxxxGHLGELALSSASMATSFTNVTGLHVLMGMAGALETLCGQAYGAKQYHLLGIQLQR
A9NVJ0_______________EDDSLRVPILER-----NGEEGRDSVIIFQEESQAEGDLRKRIWVESKKLWRIAGPAIFTRLTTYxxxxxxxxxxGHLGDLELAAITISTTVIVGLSFGLLLGMGSALETMCGQAFGARQYDMLGVYLQR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain