SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene34777

Length: 472 nt

UniGene Fasta

>sp_v1.1_unigene34777
GATGTGCATGCCTTGTCAAATAATACCGGCATAACAGCTGTGCTGAATTTACAATGTGAAAGTGAGCGGGAAAATTGGGGCATTGATTCTCAAGCTATCGTCGTGCCTTTGCTGTCATTTTGTGGTGGTCAATTGCCCTATGAGGGAGGTTGACTCTGTTGACTTGCGGCGCAAGCTTCCTTTTTCTGTGGGAGTTTTATATAGACTTCTGAGGAGGAATCACCGTGTATTTGTCACATGCACAACTGGGCTTGATCGCTCACCTGCTTGTGTGATTGCTTATTTACATTGGATTCAAGATGTGGTCCTGCAAGAAGCATTAAATTTTGTCACCAGTTTGCATCCATGTGTACCAGACAGACAAGGCAAGGAATGGTGGACCACTCTCGGCAATGCTCAAGTTCTGTAGCAAGTAATGTTTTGTAGATATTCAAATTTTGGTGGTACACAGAAAATTGCAAGCCAGCTCTTG

Ace file of the UniGene sp_v1.1_unigene34777

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DSPc domain containing protein	-	-	3.0e-08	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	dual-specificity protein phosphatase 6	-	-	7.82572e-36	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	starch catabolic process	GO:0005983	Biological Process	7.82572e-36	70%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	7.82572e-36	70%
Blast2go	starch grain	GO:0043036	Cellular Component	7.82572e-36	70%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD05

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 118 aas, putative chimeric sequence, your sequence is shorter than subject: 51 - 287

Fln protein: DVHALSNNTGITAVLNLQCESERENWGIDSQAIVVPLLSFCGGQLPYEGG*

Protein Length: 52

Fln nts: GATGTGCATGCCTTGTCAAATAATACCGGCATAACAGCTGTGCTGAATTTACAATGTGAAAGTGAGCGGGAAAATTGGGGCATTGATTCTCAAGCTATCGTCGTGCCTTTGCTGTCATTTTGTGGTGGTCAATTGCCCTATGAGGGAGGTTGA___CTCTGTTGACTTGCGGCGCAAGCTTCCTTTTTCTGTGGGAGTTTTATATAGACTTCTGAGGAGGAATCACCGTGTATTTGTCACATGCACAACTGGGCTTGATCGCTCACCTGCTTGTGTGATTGCTTATTTACATTGGATTCAAGATGTGGTCCTGCAAGAAGCATTAAATTTTGTCACCAGTTTGCATCCATGTGTACCAGACAGACAAGGCAAGGAATGGTGGACCACTCTCGGCAATGCTCAAGTTCTGTAGCAAGTAATGTTTTGTAGATATTCAAATTTTGGTGGTACACAGAAAATTGCAAGCCAGCTCTTG

Fln Alignment:

sp_v1.1_unigene34777___DVHALSNNTGITAVLNLQCESERENWGIDSQAIV
D5AD05_______________DIDRLKEEEGVTAILNLQQDKDIEYWGIDLGSIV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
206	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain