SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene34776

Length: 805 nt

Origin of reads: Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene34776

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine protein kinase, putative n=1 Tax=Ricinus communis RepID=B9SWQ3_RICCO	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	serine threonine protein	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	79%
Blast2go	transferase activity	GO:0016740	Molecular Function	79%
Blast2go	cytoplasm	GO:0005737	Cellular Component	79%
Blast2go	nucleolus	GO:0005730	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	79%
Blast2go	Protein kinase-like domain	IPR011009	-	79%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	79%

Full-Lengther Next Prediction

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
239			20	80	0.995493
240	80			20	0.995493
241		20		80	0.995493
243		80		20	0.995493
244	80		20		0.995493
247		20	80		0.995493
248		20		80	0.995493
251	80		20		0.995493
252	80		20		0.995493
253	80	20			0.995493
254	80			20	0.995493
256		80		20	0.995493
259		20	80		0.995493
261		20	80		0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain