SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene34773

Length: 488 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene34773
GAAGGTGTGGAATGCAGTAACTGGTCGAAAGCAGTACGCATTCTATGTTGCACGAAACTTCAAAGAACCCCGCGTTTCGAGCCGTACCCGTACCCGAAACTTGGCGGAAACTCGGCGGAAACTCGCAATCAGTACGCATTTGAAGGCCATGAAGTAGCTATATGTTCAGTTTGTCTTCACCGTAAGAAAATATTCAGCTATTGATTGAAAGATTAAAGCCTGGTTATATGATCTTGCCGAATCTTTCGGGCCTTATAGTGCTGATGGAACAAGGCTCTTCTCCTGTGGAACAAGTAAAGGTGGTGATTCATACCTGGTTGAGTGGAATGAAAGCGAGGGAACAATCCAACGGACATAATCTGATTTTAAGTGTTCCTTGGGTGTTGTGCAATTTGATACAACCAGTAATAGGTTGTTGGCAGCTGGTGATGAATTTCAAATAAAGTTCTGGGACATGAATAACACCAACATCCTGACAACAATTGATG

Ace file of the UniGene sp_v1.1_unigene34773 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	Isoform 1 of Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1	-	-	0.0	48%
Blast2go	protein	-	-	2.49033e-36	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q0WV90-1

Fln msg: Distance to subject end: 484 aas, your sequence is shorter than subject: 162 - 1119

Fln protein: KVWNAVTGRKQYAFYVARNFKEPRVSSRTRTRNLAETRRKLAISTHLKAMK*LYVQFVFTVRKYSAID*KIKAWLYDLAESFGPYSADGTRLFSCGTSKGGDSYLVEWNESEGTIQRT*SDFKCSLGVVQFDTTSNRLLAAGDEFQIKFWDMNNTNILTTID

Protein Length: 163

Fln nts: GAAGGTGTGGAATGCAGTAACTGGTCGAAAGCAGTACGCATTCTATGTTGCACGAAACTTCAAAGAACCCCGCGTTTCGAGCCGTACCCGTACCCGAAACTTGGCGGAAACTCGGCGGAAACTCGCAATCAGTACGCATTTGAAGGCCATGAAGTAGCTATATGTTCAGTTTGTCTTCACCGTAAGAAAATATTCAGCTATTGATTGAAAGATTAAAGCCTGGTTATATGATCTTGCCGAATCTTTCGGGCCTTATAGTGCTGATGGAACAAGGCTCTTCTCCTGTGGAACAAGTAAAGGTGGTGATTCATACCTGGTTGAGTGGAATGAAAGCGAGGGAACAATCCAACGGACATAATCTGATTTTAAGTGTTCCTTGGGTGTTGTGCAATTTGATACAACCAGTAATAGGTTGTTGGCAGCTGGTGATGAATTTCAAATAAAGTTCTGGGACATGAATAACACCAACATCCTGACAACAATTGATG

Fln Alignment:

sp_v1.1_unigene34773___KVWNAVTGRKQYAFYVARNFKEPRVSSRTRTRNLAETRRKLAISTHLKAMK*LYVQFVFTVRKYSAID*KIKAWLYDLAES------------FGPYSADGTRLFSCGTSKGGDSYLVEWNESEGTIQRT*SDF-KCSLGVVQFDTTSNRLLAAGDEFQIKFWDMNNTNILTTID
Q0WV90-1_____________KVWDAATGVKRYTF---EGHEAPVYS----------------ICPHYKEN----IQFIFS----TALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAID

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain